RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CT47A1Q5JQC4 288 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 PPP1R18Q6NYC8 613 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 LRRN4CLQ8ND94 238 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ATRIPQ8WXE1 791 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC113Q9H0I3 377 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CNNM1Q9NRU3 951 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 HYPKQ9NX55 129 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 TLR7Q9NYK1 1049 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 MYH13Q9UKX3 1938 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 A0A087WZG4 1122 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 XBP1P17861 261 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 HMGB2P26583 209 aaKnown RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 DHX9Q08211 1270 aaKnown RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 HLTFQ14527 1009 aaKnown RBP eCLIP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 LIAT1Q6ZQX7 453 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 FLAD1Q8NFF5 587 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 CRELD1Q96HD1 420 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 COPRSQ9NQ92 184 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 METTL5Q9NRN9 209 aaKnown RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 DDX41Q9UJV9 622 aaKnown RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 MINDY4BA8MYZ0 360 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 CDK2AP1O14519 115 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 FANCGO15287 622 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 DDR1Q08345 913 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 MTX1Q13505 466 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 PROSER3Q2NL68 480 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 C11orf91Q3C1V1 193 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF280CQ8ND82 737 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 ITPKCQ96DU7 683 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 BAG1Q99933 345 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 SLC26A6Q9BXS9 759 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 SRA1Q9HD15 236 aaKnown RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 MAPK8IP1Q9UQF2 711 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 DOCK2Q92608 1830 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 MEN1O00255 615 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF213O14771 459 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 SLC27A2O14975 620 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 HOXB7P09629 217 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 EPS15P42566 896 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 FAM160A1Q05DH4 1040 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 SLC39A6Q13433 755 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 C11orf57Q6ZUT1 292 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-203ENST00000547825 PSMB7Q99436 277 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 BRMS1Q9HCU9 246 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.18□□□□□ -1.421e-7■■■■■ 115.4
LIMA1-203ENST00000547825 INPP5FQ9Y2H2 1132 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 AK5Q9Y6K8 562 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 EBAG9O00559 213 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 IVLP07476 585 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 TDO2P48775 406 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC57Q2TAC2 916 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 SLC4A8Q2Y0W8 1093 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 ALG1LQ6GMV1 187 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 ANKLE1Q8NAG6 615 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 USP28Q96RU2 1077 aa6.18□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC175P0C221 793 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 IL6STP40189 918 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CCT6AP40227 531 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 RELBQ01201 579 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 RTN1Q16799 776 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 ANKRD7Q92527 254 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 STAMQ92783 540 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 UBAC1Q9BSL1 405 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 ALG1Q9BT22 464 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 ABCF2Q9UG63 623 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CTNNA3Q9UI47 895 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 TRPM7Q96QT4 1865 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 FAM170AA1A519 330 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CTAGE9A4FU28 777 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 IFIT3O14879 490 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 MYO1BO43795 1136 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 IARSP41252 1262 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CHMP4BP1P59074 171 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 TIMM10P62072 90 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 ETF1P62495 437 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 MAP9Q49MG5 647 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 TTC19Q6DKK2 380 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 MAATS1Q7Z4T9 603 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 SSH3Q8TE77 659 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 DHX58Q96C10 678 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 HSH2DQ96JZ2 352 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 SEC62Q99442 399 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 STK32BQ9NY57 414 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 DBF4Q9UBU7 674 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 NARFQ9UHQ1 456 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CD2APQ9Y5K6 639 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 NEDD4P46934 1319 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 PCNTO95613 3336 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 A0A1B0GUL7 405 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 LIG3P49916 1009 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CABP4P57796 275 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 RNASE9P60153 205 aaKnown RBP6.17□□□□□ -1.42
LIMA1-203ENST00000547825 CLN3Q13286 438 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 EEF2KMTQ96G04 330 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 ZFAND3Q9H8U3 227 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 GGT7Q9UJ14 662 aa6.17□□□□□ -1.42
LIMA1-203ENST00000547825 GOLGA6L7A0A1B0GV03 622 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 GOLGA8AA7E2F4 631 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 CDKL5O76039 1030 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 764.5 ms