RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 CTAGE5O15320 804 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 BEX3Q00994 111 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 FPGSQ05932 587 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 TRAF1Q13077 416 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 SHHQ15465 462 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 CDC37Q16543 378 aaPredicted RBP10.93□□□□□ -0.66
YBX3-218ENST00000546298 USH1GQ495M9 461 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 DUSP28Q4G0W2 176 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 FAM109BQ6ICB4 259 aaPredicted RBP10.93□□□□□ -0.66
YBX3-218ENST00000546298 RALYLQ86SE5 291 aaKnown RBP10.93□□□□□ -0.66
YBX3-218ENST00000546298 PURBQ96QR8 312 aaKnown RBP10.93□□□□□ -0.66
YBX3-218ENST00000546298 WDR11Q9BZH6 1224 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 PDGFCQ9NRA1 345 aa10.93□□□□□ -0.66
YBX3-218ENST00000546298 MRPL11Q9Y3B7 192 aaKnown RBP10.93□□□□□ -0.66
YBX3-218ENST00000546298 ASTN1O14525 1302 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 TIMP1P01033 207 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 IRX5P78411 483 aaPredicted RBP10.92□□□□□ -0.66
YBX3-218ENST00000546298 SART3Q15020 963 aaKnown RBP10.92□□□□□ -0.66
YBX3-218ENST00000546298 CXCL17Q6UXB2 119 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 SLC30A10Q6XR72 485 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 FBXO11Q86XK2 927 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 ADGRF4Q8IZF3 695 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 SCFD2Q8WU76 684 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 VAT1LQ9HCJ6 419 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 GPHNQ9NQX3 736 aaPredicted RBP10.92□□□□□ -0.66
YBX3-218ENST00000546298 POLR3EQ9NVU0 708 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 TBX21Q9UL17 535 aa10.92□□□□□ -0.66
YBX3-218ENST00000546298 PARP14Q460N5 1801 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 RBM47A0AV96 593 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 KLRF2D3W0D1 207 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 IFIT3O14879 490 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 SGSM2O43147 1006 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 KPNA6O60684 536 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 CYP21A2P08686 494 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 EDNRBP24530 442 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 CPT1AP50416 773 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 SMAD3P84022 425 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 PPIGQ13427 754 aaKnown RBP eCLIP10.91□□□□□ -0.669e-15■□□□□ 10.4
YBX3-218ENST00000546298 ITGA7Q13683 1181 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 PPP2R5BQ15173 497 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 SEC23AQ15436 765 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 QRICH1Q2TAL8 776 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 C9orf50Q5SZB4 431 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 ZNF697Q5TEC3 545 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 MFSD5Q6N075 450 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 FAM126BQ8IXS8 530 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 TMEM199Q8N511 208 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 SLC43A3Q8NBI5 491 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 NCOA7Q8NI08 942 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 NSUN6Q8TEA1 469 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 RNPC3Q96LT9 517 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 AMNQ9BXJ7 453 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 IL25Q9H293 177 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 CPVLQ9H3G5 476 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 MTMR10Q9NXD2 777 aa10.91□□□□□ -0.66
YBX3-218ENST00000546298 DDX49Q9Y6V7 483 aaKnown RBP10.91□□□□□ -0.66
YBX3-218ENST00000546298 CENPFP49454 3210 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 MKI67P46013 3256 aaKnown RBP10.9□□□□□ -0.66
YBX3-218ENST00000546298 ITGB8P26012 769 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 PTH1RQ03431 593 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 TTLL4Q14679 1199 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 Q7L0L9 218 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 CYB5R4Q7L1T6 521 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 SAMD3Q8N6K7 520 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 OR6J1Q8NGC5 347 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 SYTL5Q8TDW5 730 aaPredicted RBP10.9□□□□□ -0.66
YBX3-218ENST00000546298 IWS1Q96ST2 819 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 JMJD4Q9H9V9 463 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 MAP3K20Q9NYL2 800 aaKnown RBP10.9□□□□□ -0.66
YBX3-218ENST00000546298 STXBP5LQ9Y2K9 1186 aa10.9□□□□□ -0.66
YBX3-218ENST00000546298 ALPK3Q96L96 1907 aa10.9□□□□□ -0.67
YBX3-218ENST00000546298 COL11A1P12107 1806 aaPredicted RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 PALM3A6NDB9 673 aaPredicted RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 E7EWF7 191 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 ZBTB5O15062 677 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 CD4P01730 458 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 MYL3P08590 195 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 SUPT20HL2P0C7V6 817 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 TXNP10599 105 aaKnown RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 WTAPQ15007 396 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 STXBP2Q15833 593 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 CATIPQ7Z7H3 387 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 SLC17A8Q8NDX2 589 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 MAP4K1Q92918 833 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 MTG1Q9BT17 334 aaPredicted RBP10.89□□□□□ -0.67
YBX3-218ENST00000546298 PPP1R12CQ9BZL4 782 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 PCDHA1Q9Y5I3 950 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 MYH4Q9Y623 1939 aa10.89□□□□□ -0.67
YBX3-218ENST00000546298 TMEM265A0A087WTH1 108 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 EPHB4P54760 987 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 GRM4Q14833 912 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 TMEM67Q5HYA8 995 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 ARHGEF16Q5VV41 709 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 PSRC1Q6PGN9 363 aaPredicted RBP10.88□□□□□ -0.67
YBX3-218ENST00000546298 TMTC2Q8N394 836 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 STAG2Q8N3U4 1231 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 TBC1D5Q92609 795 aa10.88□□□□□ -0.67
YBX3-218ENST00000546298 TAAR1Q96RJ0 339 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms