RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 LRRIQ3A6PVS8 624 aaPredicted RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 NKRFO15226 690 aaKnown RBP eCLIP21.74■■□□□ 1.07
PCF11-203ENST00000530304 IPO7O95373 1038 aaKnown RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 AMPD3Q01432 767 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 RC3H1Q5TC82 1133 aaKnown RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 ZSCAN29Q8IWY8 852 aaPredicted RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 HPS3Q969F9 1004 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 ZNF287Q9HBT7 754 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 LEMD3Q9Y2U8 911 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 PPP1R2P41236 205 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 CDK8P49336 464 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 CAPZA3Q96KX2 299 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 RNF216Q9NWF9 866 aaPredicted RBP21.73■■□□□ 1.07
PCF11-203ENST00000530304 DUSP10Q9Y6W6 482 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 NAV1Q8NEY1 1877 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 LDHCP07864 332 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 NFIXQ14938 502 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 ZSCAN26Q16670 478 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 MUM1L1Q5H9M0 696 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 KIAA0895Q8NCT3 520 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 TBCKQ8TEA7 893 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 RRP36Q96EU6 259 aaKnown RBP21.73■■□□□ 1.07
PCF11-203ENST00000530304 RTFDC1Q9BY42 306 aaPredicted RBP21.73■■□□□ 1.07
PCF11-203ENST00000530304 VAT1LQ9HCJ6 419 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 FAN1Q9Y2M0 1017 aa21.73■■□□□ 1.07
PCF11-203ENST00000530304 FAM98CQ17RN3 349 aaKnown RBP21.72■■□□□ 1.07
PCF11-203ENST00000530304 CNNM4Q6P4Q7 775 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 GPR101Q96P66 508 aaPredicted RBP21.72■■□□□ 1.07
PCF11-203ENST00000530304 ERGIC2Q96RQ1 377 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 PODXL2Q9NZ53 605 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 SBF2Q86WG5 1849 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 CYP27A1Q02318 531 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 FIGNQ5HY92 759 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 SOGA3Q5TF21 947 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 C16orf86Q6ZW13 317 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 CCDC102AQ96A19 550 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 SEMA6BQ9H3T3 888 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 SLC39A2Q9NP94 309 aa21.72■■□□□ 1.07
PCF11-203ENST00000530304 BIN2Q9UBW5 565 aaPredicted RBP21.72■■□□□ 1.07
PCF11-203ENST00000530304 SEC63Q9UGP8 760 aaKnown RBP21.72■■□□□ 1.07
PCF11-203ENST00000530304 A0A1W2PQJ5 194 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 FKBP15Q5T1M5 1219 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 AMIGO3Q86WK7 504 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 POTEDQ86YR6 584 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 NEDD1Q8NHV4 660 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 CALML4Q96GE6 196 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 SNED1Q8TER0 1413 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 BTDP43251 543 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 CDK17Q00537 523 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 COBLL1Q53SF7 1204 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 ZNF804AQ7Z570 1209 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 RPGRIP1Q96KN7 1286 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 PIGSQ96S52 555 aa21.71■■□□□ 1.07
PCF11-203ENST00000530304 TXKP42681 527 aa21.7■■□□□ 1.06
PCF11-203ENST00000530304 GRAPQ13588 217 aa21.7■■□□□ 1.06
PCF11-203ENST00000530304 HSP90B2PQ58FF3 399 aa21.7■■□□□ 1.06
PCF11-203ENST00000530304 GRAPLQ8TC17 118 aaPredicted RBP21.7■■□□□ 1.06
PCF11-203ENST00000530304 ARHGEF1Q92888 912 aaKnown RBP21.7■■□□□ 1.06
PCF11-203ENST00000530304 PURBQ96QR8 312 aaKnown RBP21.7■■□□□ 1.06
PCF11-203ENST00000530304 MACROD2A1Z1Q3 448 aa21.7■■□□□ 1.06
PCF11-203ENST00000530304 CKAP4Q07065 602 aaKnown RBP21.7■■□□□ 1.06
PCF11-203ENST00000530304 CENPPQ6IPU0 288 aa21.7■■□□□ 1.06
PCF11-203ENST00000530304 RTCBQ9Y3I0 505 aaKnown RBP21.7■■□□□ 1.06
PCF11-203ENST00000530304 ZNF185O15231 689 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 KIF5AQ12840 1032 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 SV2BQ7L1I2 683 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 GOLGA5Q8TBA6 731 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 FAM71BQ8TC56 605 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 CEP95Q96GE4 821 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 CCDC42Q96M95 316 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 TMEM260Q9NX78 707 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 TNRC6CQ9HCJ0 1690 aaKnown RBP21.69■■□□□ 1.06
PCF11-203ENST00000530304 TULP2O00295 520 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 ZNF263O14978 683 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 MCM3P25205 808 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 VAV2P52735 878 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 REXO1Q8N1G1 1221 aaKnown RBP21.69■■□□□ 1.06
PCF11-203ENST00000530304 UBA5Q9GZZ9 404 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 ACBD3Q9H3P7 528 aa21.69■■□□□ 1.06
PCF11-203ENST00000530304 ANO9A1A5B4 782 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 PHACTR2O75167 634 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 PLEKP08567 350 aaPredicted RBP21.68■■□□□ 1.06
PCF11-203ENST00000530304 IDEP14735 1019 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 SMARCA1P28370 1054 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 GRB10Q13322 594 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 JADE2Q9NQC1 790 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 BLOC1S4Q9NUP1 217 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 LRWD1Q9UFC0 647 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 TARSL2A2RTX5 802 aaKnown RBP21.68■■□□□ 1.06
PCF11-203ENST00000530304 VWA3BQ502W6 1294 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 KRT26Q7Z3Y9 468 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 TEX11Q8IYF3 940 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 SECISBP2LQ93073 1101 aaKnown RBP21.68■■□□□ 1.06
PCF11-203ENST00000530304 MTMR9Q96QG7 549 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 VIPAS39Q9H9C1 493 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 MED4Q9NPJ6 270 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 PLAGL2Q9UPG8 496 aa21.68■■□□□ 1.06
PCF11-203ENST00000530304 MYMKA6NI61 221 aa21.67■■□□□ 1.06
PCF11-203ENST00000530304 ACTN2P35609 894 aa21.67■■□□□ 1.06
PCF11-203ENST00000530304 IRX5P78411 483 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms