RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NAP1L4Q99733 375 aaKnown RBP23.91■■□□□ 1.42
VPS28-208ENST00000527797 CFBP00751 764 aa23.9■■□□□ 1.42
VPS28-208ENST00000527797 NUP62CLQ9H1M0 184 aa23.9■■□□□ 1.42
VPS28-208ENST00000527797 CELF2O95319 508 aaKnown RBP23.89■■□□□ 1.42
VPS28-208ENST00000527797 ALAS1P13196 640 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 PFKFB1P16118 471 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 HOXA13P31271 388 aaPredicted RBP23.89■■□□□ 1.42
VPS28-208ENST00000527797 NDUFA8P51970 172 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 OAZ1P54368 228 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 GRIN1Q05586 938 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 SNW1Q13573 536 aaKnown RBP23.89■■□□□ 1.42
VPS28-208ENST00000527797 TREML2Q5T2D2 321 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 CHADLQ6NUI6 762 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 MCF2L2Q86YR7 1114 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 CSRNP2Q9H175 543 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 FAM13BQ9NYF5 915 aa23.89■■□□□ 1.42
VPS28-208ENST00000527797 NEMFO60524 1076 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 USP11P51784 963 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 FMR1NBQ8N0W7 255 aaPredicted RBP23.88■■□□□ 1.41
VPS28-208ENST00000527797 CLSTN2Q9H4D0 955 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 FAM237AA0A1B0GTK4 181 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 KINO60870 393 aaKnown RBP23.88■■□□□ 1.41
VPS28-208ENST00000527797 HOXA7P31268 230 aaPredicted RBP23.88■■□□□ 1.41
VPS28-208ENST00000527797 ZNF445P59923 1031 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 PPP4R3AQ6IN85 833 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 FASTKD5Q7L8L6 764 aaKnown RBP23.88■■□□□ 1.41
VPS28-208ENST00000527797 REPS2Q8NFH8 660 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 TBC1D5Q92609 795 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 WNK4Q96J92 1243 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 HPSEQ9Y251 543 aa23.88■■□□□ 1.41
VPS28-208ENST00000527797 SYCE3A1L190 88 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 VWA3AA6NCI4 1184 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 SPDYE16A6NNV3 312 aaPredicted RBP23.87■■□□□ 1.41
VPS28-208ENST00000527797 EDIL3O43854 480 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 GCFC2P16383 781 aaKnown RBP23.87■■□□□ 1.41
VPS28-208ENST00000527797 PRPHP41219 470 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 FCHSD1Q86WN1 690 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 SAMD3Q8N6K7 520 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 CLEC4DQ8WXI8 215 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 TMEM60Q9H2L4 133 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 TNMDQ9H2S6 317 aa23.87■■□□□ 1.41
VPS28-208ENST00000527797 ATP2A1O14983 1001 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 OR52Z1P0C646 297 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 SNAPC2Q13487 334 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 SPECC1Q5M775 1068 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 DTHD1Q6ZMT9 781 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 P2RX7Q99572 595 aaKnown RBP23.86■■□□□ 1.41
VPS28-208ENST00000527797 EHMT1Q9H9B1 1298 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 AGTPBP1Q9UPW5 1226 aa23.86■■□□□ 1.41
VPS28-208ENST00000527797 TDP2O95551 362 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 ITGBL1O95965 494 aaPredicted RBP23.85■■□□□ 1.41
VPS28-208ENST00000527797 GJA5P36382 358 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 SREBF1P36956 1147 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 SYKP43405 635 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 ARHGAP4P98171 946 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 CAMK4Q16566 473 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 TRERF1Q96PN7 1200 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 MAP3K20Q9NYL2 800 aaKnown RBP23.85■■□□□ 1.41
VPS28-208ENST00000527797 KCNH3Q9ULD8 1083 aa23.85■■□□□ 1.41
VPS28-208ENST00000527797 ZNF202O95125 648 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 LONP1P36776 959 aaKnown RBP23.84■■□□□ 1.41
VPS28-208ENST00000527797 HSD17B4P51659 736 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 IRX3P78415 501 aaPredicted RBP23.84■■□□□ 1.41
VPS28-208ENST00000527797 PABPC4Q13310 644 aaKnown RBP eCLIP23.84■■□□□ 1.411e-7■■■□□ 18.8
VPS28-208ENST00000527797 TMEM132BQ14DG7 1078 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 IL17AQ16552 155 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 SNRNP48Q6IEG0 339 aaKnown RBP23.84■■□□□ 1.41
VPS28-208ENST00000527797 MOXD1Q6UVY6 613 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 HOMER2Q9NSB8 354 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 NFIBO00712 420 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 GHRHRQ02643 423 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 MUM1L1Q5H9M0 696 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 CRYGNQ8WXF5 182 aa23.84■■□□□ 1.41
VPS28-208ENST00000527797 DDX25Q9UHL0 483 aaKnown RBP23.84■■□□□ 1.41
VPS28-208ENST00000527797 ZNF214Q9UL59 606 aaPredicted RBP23.84■■□□□ 1.41
VPS28-208ENST00000527797 CTAGE5O15320 804 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 MOGSQ13724 837 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 CALCRLQ16602 461 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 TKFCQ3LXA3 575 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 POTEDQ86YR6 584 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 MB21D1Q8N884 522 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 TEX13BQ9BXU2 312 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 RNF146Q9NTX7 359 aa23.83■■□□□ 1.41
VPS28-208ENST00000527797 CYP3A7-CYP3A51PA0A087WV96 503 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 SLC37A4O43826 429 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 CYP3A4P08684 503 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 OSBPP22059 807 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 CYP3A7P24462 503 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 STAT3P40763 770 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 CST9Q5W186 159 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 LRSAM1Q6UWE0 723 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 TIGD1Q96MW7 591 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 MTMR9Q96QG7 549 aa23.82■■□□□ 1.4
VPS28-208ENST00000527797 LBX2Q6XYB7 198 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 SYMPKQ92797 1274 aaKnown RBP23.81■■□□□ 1.4
VPS28-208ENST00000527797 EPSTI1Q96J88 318 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 SDF4Q9BRK5 362 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 ASCC2Q9H1I8 757 aaPredicted RBP23.81■■□□□ 1.4
VPS28-208ENST00000527797 RIPK3Q9Y572 518 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 LOC285556D6RIA3 1793 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms