RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ITGA6P23229 1130 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 EIF4BP23588 611 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 U2AF2P26368 475 aaKnown RBP eCLIP8.43□□□□□ -1.066e-7■■■■■ 29.6
HDAC3-216ENST00000523088 VEGFBP49765 207 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 CCT4P50991 539 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 IFIT5Q13325 482 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 ENOX2Q16206 610 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 EMC10Q5UCC4 262 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 PDXDC2PQ6P474 469 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 RSBN1LQ6PCB5 846 aaPredicted RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 SYT10Q6XYQ8 523 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 USP17L1Q7RTZ2 530 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 PACS2Q86VP3 889 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 MFN1Q8IWA4 741 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 SULF1Q8IWU6 871 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 MSANTD4Q8NCY6 345 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 FBXO18Q8NFZ0 1043 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 CEP95Q96GE4 821 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 EPSTI1Q96J88 318 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 RUFY1Q96T51 708 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 GREM2Q9H772 168 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 UBAP1Q9NZ09 502 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 KIAA1468Q9P260 1216 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 EPS15L1Q9UBC2 864 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 TRAF3IP3Q9Y228 551 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 MRPL11Q9Y3B7 192 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 PTPRCP08575 1304 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 PITPNM2Q9BZ72 1349 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 WDR33Q9C0J8 1336 aaKnown RBP8.43□□□□□ -1.06
HDAC3-216ENST00000523088 COL4A1P02462 1669 aa8.43□□□□□ -1.06
HDAC3-216ENST00000523088 AKAP11Q9UKA4 1901 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 A0A0B4J203 849 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 C2orf81A6NN90 581 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 STXBP3O00186 592 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 GRM8O00222 908 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 DIAPH2O60879 1101 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 CELF2O95319 508 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 RPSAP08865 295 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 USP17L8P0C7I0 530 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 HSD3B2P26439 372 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SNX16P57768 344 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 ZNF280AP59817 542 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 FKBP1BP68106 108 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 MRPL28Q13084 256 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 IKQ13123 557 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SMC1AQ14683 1233 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 DOK7Q18PE1 504 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 CCDC57Q2TAC2 916 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 STRIP1Q5VSL9 837 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 NXNQ6DKJ4 435 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 FIP1L1Q6UN15 594 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 G2E3Q7L622 706 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 CEP57Q86XR8 500 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 ERC1Q8IUD2 1116 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 RPAP2Q8IXW5 612 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 RNF168Q8IYW5 571 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SLC7A5P1Q8MH63 180 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 RASSF8Q8NHQ8 419 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 KIF18AQ8NI77 898 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 GPT2Q8TD30 523 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 GIPC2Q8TF65 315 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.42□□□□□ -1.061e-6■■■■■ 56.2
HDAC3-216ENST00000523088 LZICQ8WZA0 190 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 PPP1R14BQ96C90 147 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SERINC2Q96SA4 455 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 SYNCQ9H7C4 482 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 DDX25Q9UHL0 483 aaKnown RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 MINPP1Q9UNW1 487 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 PPP2R3BQ9Y5P8 575 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 ZNF521Q96K83 1311 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 PAPPA2Q9BXP8 1791 aa8.42□□□□□ -1.06
HDAC3-216ENST00000523088 ZNF646O15015 1829 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-216ENST00000523088 ARAP2Q8WZ64 1704 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 COL1A1P02452 1464 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-216ENST00000523088 ZNF804BA4D1E1 1349 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 TMEM232C9JQI7 657 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 ABLIM1O14639 778 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 KPNA6O60684 536 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 SKAP2O75563 359 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-216ENST00000523088 CTHP32929 405 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 CASP7P55210 303 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 UBASH3AP57075 661 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 ARPC4P59998 168 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 NOGQ13253 232 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 COG2Q14746 738 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 CCDC14Q49A88 953 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 BEND3Q5T5X7 828 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 NAA16Q6N069 864 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-216ENST00000523088 ALKBH2Q6NS38 261 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 ATF7IPQ6VMQ6 1270 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 GBP6Q6ZN66 633 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 C15orf52Q6ZUT6 534 aaKnown RBP8.41□□□□□ -1.06
HDAC3-216ENST00000523088 KRT26Q7Z3Y9 468 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 SLC51AQ86UW1 340 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 REM2Q8IYK8 340 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-216ENST00000523088 TNS4Q8IZW8 715 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 CCDC150Q8NCX0 1101 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 C3orf20Q8ND61 904 aa8.41□□□□□ -1.06
HDAC3-216ENST00000523088 KIAA1524Q8TCG1 905 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms