RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 DOCK3Q8IZD9 2030 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 POTEB2H3BUK9 544 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 OPLAHO14841 1288 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 PGK2P07205 417 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 GJB2P29033 226 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 ANP32AP39687 249 aaKnown RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 RGS2P41220 211 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 MRPL12P52815 198 aaKnown RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 NLRP5P59047 1200 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 RPS6P62753 249 aaKnown RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 PRKCZQ05513 592 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 MAP2K5Q13163 448 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 MORN1Q5T089 497 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 TYW1BQ6NUM6 668 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 SLC30A10Q6XR72 485 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 SAMD3Q8N6K7 520 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 MAF1Q9H063 256 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 GLT8D2Q9H1C3 349 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 MAP3K20Q9NYL2 800 aaKnown RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 SRRDQ9UH36 339 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 GNA11P29992 359 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 FLT3LGP49771 235 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 FOSBP53539 338 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 PRMT2P55345 433 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 OTOP1Q7RTM1 612 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 FAM177A1Q8N128 213 aaPredicted RBP16.73■□□□□ 0.27
BRCA1-223ENST00000494123 TBC1D5Q92609 795 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 INTS4Q96HW7 963 aaKnown RBP16.73■□□□□ 0.27
BRCA1-223ENST00000494123 RIC8AQ9NPQ8 531 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 GABRQQ9UN88 632 aa16.73■□□□□ 0.27
BRCA1-223ENST00000494123 PLXNA1Q9UIW2 1896 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 ESYT2A0FGR8 921 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 CYP2B6P20813 491 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 HOXA13P31271 388 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-223ENST00000494123 RAET1EQ8TD07 263 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 BICD2Q8TD16 824 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 APBA2Q99767 749 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 ZMYND12Q9H0C1 365 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 GJD2Q9UKL4 321 aa16.72■□□□□ 0.27
BRCA1-223ENST00000494123 HSD17B4P51659 736 aa16.71■□□□□ 0.27
BRCA1-223ENST00000494123 USP17L6PQ6QN14 398 aa16.71■□□□□ 0.27
BRCA1-223ENST00000494123 CTU1Q7Z7A3 348 aaKnown RBP16.71■□□□□ 0.27
BRCA1-223ENST00000494123 SYTL5Q8TDW5 730 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-223ENST00000494123 C8orf76Q96K31 380 aa16.71■□□□□ 0.27
BRCA1-223ENST00000494123 PRDM10Q9NQV6 1147 aa16.71■□□□□ 0.27
BRCA1-223ENST00000494123 ADD3Q9UEY8 706 aaKnown RBP16.71■□□□□ 0.27
BRCA1-223ENST00000494123 DNAJC25-GNG10A0A024R161 153 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 PIK3CDO00329 1044 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 COBLO75128 1261 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 CNTN2Q02246 1040 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 GHRHRQ02643 423 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 UBE2SQ16763 222 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 FCHSD1Q86WN1 690 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 TEX2Q8IWB9 1127 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 USP6NLQ92738 828 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 GJB4Q9NTQ9 266 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 KCNJ14Q9UNX9 436 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 SPDYE3A6NKU9 549 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 MEIS2O14770 477 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 ZNF792Q3KQV3 632 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 GALNT17Q6IS24 598 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 REXO1Q8N1G1 1221 aaKnown RBP16.7■□□□□ 0.26
BRCA1-223ENST00000494123 FAM133AQ8N9E0 248 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 SPRYD3Q8NCJ5 442 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 SHISA4Q96DD7 197 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 MPHOSPH6Q99547 160 aaKnown RBP16.7■□□□□ 0.26
BRCA1-223ENST00000494123 PHF20Q9BVI0 1012 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 BRMS1Q9HCU9 246 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 PCDHA4Q9UN74 947 aa16.7■□□□□ 0.26
BRCA1-223ENST00000494123 DIS3Q9Y2L1 958 aaKnown RBP16.7■□□□□ 0.26
BRCA1-223ENST00000494123 LCTP09848 1927 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 HOXC6P09630 235 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 XRCC5P13010 732 aaKnown RBP16.69■□□□□ 0.26
BRCA1-223ENST00000494123 IRF5Q13568 498 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 KRT40Q6A162 431 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 BLIDQ8IZY5 108 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 NPLOC4Q8TAT6 608 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 MAML3Q96JK9 1138 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 PURBQ96QR8 312 aaKnown RBP16.69■□□□□ 0.26
BRCA1-223ENST00000494123 RMDN3Q96TC7 470 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 TSHZ2Q9NRE2 1034 aa16.69■□□□□ 0.26
BRCA1-223ENST00000494123 BIN2Q9UBW5 565 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-223ENST00000494123 GUCY1B3Q02153 619 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 SAFBQ15424 915 aaKnown RBP eCLIP16.68■□□□□ 0.26
BRCA1-223ENST00000494123 ARHGEF16Q5VV41 709 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 MCTP2Q6DN12 878 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 TRMT44Q8IYL2 757 aaKnown RBP16.68■□□□□ 0.26
BRCA1-223ENST00000494123 DNERQ8NFT8 737 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 NSUN6Q8TEA1 469 aaKnown RBP16.68■□□□□ 0.26
BRCA1-223ENST00000494123 TAAR1Q96RJ0 339 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 EHMT1Q9H9B1 1298 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 COL20A1Q9P218 1284 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 DAXXQ9UER7 740 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-223ENST00000494123 PTPN22Q9Y2R2 807 aa16.68■□□□□ 0.26
BRCA1-223ENST00000494123 SOWAHBA6NEL2 793 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 B4DLN1 442 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 H3BQV1 296 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 ADCY3O60266 1144 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 FOSP01100 380 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms