RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 VEZTQ9HBM0 779 aa8.68□□□□□ -1.02
USP4-211ENST00000485450 TRMT1Q9NXH9 659 aaKnown RBP8.68□□□□□ -1.02
USP4-211ENST00000485450 WDR81Q562E7 1941 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 ALPK3Q96L96 1907 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 WDR46O15213 610 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 SEC31AO94979 1220 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 CAVIN2O95810 425 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 SYT1P21579 422 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 USP5P45974 858 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 HUNKP57058 714 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 IRX1P78414 480 aaPredicted RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 SLC5A9Q2M3M2 681 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 CERKLQ49MI3 558 aaPredicted RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 RBM26Q5T8P6 1007 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 CC2D1AQ6P1N0 951 aaPredicted RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 MOB2Q70IA6 237 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 TRIM74Q86UV6 250 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 TRIM73Q86UV7 250 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 EFCAB13Q8IY85 973 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 MORC4Q8TE76 937 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 DCAF4Q8WV16 495 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 VCPKMTQ9H867 229 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 RNF186Q9NXI6 227 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 MCM9Q9NXL9 1143 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 ANGEL1Q9UNK9 670 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 PCDHGA4Q9Y5G9 962 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 CCDC69A6NI79 296 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 UBE2Q2LH0YL09 131 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 KINO60870 393 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 LTBP2Q14767 1821 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 ARID5BQ14865 1188 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 SF3A1Q15459 793 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 ABCB5Q2M3G0 1257 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 TSPAN18Q96SJ8 248 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 KRT23Q9C075 422 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 KIF23Q02241 960 aaPredicted RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 NOL8Q76FK4 1167 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 ABRAQ8N0Z2 381 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 ZKSCAN4Q969J2 545 aaPredicted RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 NUCKS1Q9H1E3 243 aaKnown RBP8.67□□□□□ -1.02
USP4-211ENST00000485450 ZSWIM6Q9HCJ5 1215 aa8.67□□□□□ -1.02
USP4-211ENST00000485450 EFCAB8A8MWE9 144 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 TADA3O75528 432 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 AP1G2O75843 785 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 SMC2O95347 1197 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 HNRNPH1P31943 449 aaKnown RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 PDRG1Q9NUG6 133 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 BTBD19C9JJ37 291 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 E7EWF7 191 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 ECM2O94769 699 aaPredicted RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 PDE4BQ07343 736 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 ZIC5Q96T25 663 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 RANBP17Q9H2T7 1088 aaKnown RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 A1CFQ9NQ94 594 aaKnown RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 CLEC11AQ9Y240 323 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 CSADQ9Y600 493 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 TTLL1O95922 423 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 KCNJ6P48051 423 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 ZNF165P49910 485 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 PRMT2P55345 433 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 DNM1Q05193 864 aaKnown RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 SHROOM1Q2M3G4 852 aaPredicted RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 CREB3L3Q68CJ9 461 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 MB21D1Q8N884 522 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 DYNLL2Q96FJ2 89 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 FUT8Q9BYC5 575 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 SH2D4AQ9H788 454 aa8.66□□□□□ -1.02
USP4-211ENST00000485450 RBM8AQ9Y5S9 174 aaKnown RBP8.66□□□□□ -1.02
USP4-211ENST00000485450 PHLPP2Q6ZVD8 1323 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 H3BQF6 201 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TLR2O60603 784 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 NEBLO76041 1014 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 FUT2Q10981 343 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TCP10Q12799 353 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 ZRSR1Q15695 479 aaKnown RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 PPP1R13BQ96KQ4 1090 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TACO1Q9BSH4 297 aaKnown RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 NAPBQ9H115 298 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TNMDQ9H2S6 317 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TAF6LQ9Y6J9 622 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 ZNF536O15090 1300 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 USP17L10C9JJH3 530 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 SH2B2O14492 632 aaPredicted RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 SLC3A2P08195 630 aaKnown RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 HOXC6P09630 235 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 ATXN8OSP0DMR3 200 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 GCLCP48506 637 aaPredicted RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 RPS6KA3P51812 740 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 PICALMQ13492 652 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 SNX1Q13596 522 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 PRAMEF18Q5VWM3 479 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 E4F1Q66K89 784 aaPredicted RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 CYP4F22Q6NT55 531 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 CYB5R4Q7L1T6 521 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 PIAS4Q8N2W9 510 aaPredicted RBP8.65□□□□□ -1.02
USP4-211ENST00000485450 SLC10A4Q96EP9 437 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 TMEM87BQ96K49 555 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 LY9Q9HBG7 655 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 PICK1Q9NRD5 415 aa8.65□□□□□ -1.02
USP4-211ENST00000485450 CYP2D7A0A087X1C5 515 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms