RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HAUS2Q9NVX0 235 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 MBD5Q9P267 1494 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 PDE5AO76074 875 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 TSHZ3Q63HK5 1081 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 PEX26Q7Z412 305 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 STRN3Q13033 797 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 SWT1Q5T5J6 900 aaKnown RBP14.47□□□□□ -0.09
USP40-208ENST00000450966 ZNF354CQ86Y25 554 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 EGFL6Q8IUX8 553 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 C8orf58Q8NAV2 365 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 PDZD8Q8NEN9 1154 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 SEPT8Q92599 483 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 KRT8P05787 483 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 C17orf50Q8WW18 174 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 SLC40A1Q9NP59 571 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 EPS15L1Q9UBC2 864 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 AATKQ6ZMQ8 1374 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 PPIP5K2O43314 1243 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 PLS1Q14651 629 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 NANOGNBQ7Z5D8 188 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 TCEANC2Q96MN5 208 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 CSADQ9Y600 493 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 EPN1Q9Y6I3 576 aaPredicted RBP14.46□□□□□ -0.09
USP40-208ENST00000450966 KRIT1O00522 736 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 IKBKBO14920 756 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 PHKG2P15735 406 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 ASIC2Q16515 512 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 Q4G0T1 1027 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 KRT79Q5XKE5 535 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 C2CD5Q86YS7 1000 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 CCDC105Q8IYK2 499 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 CD248Q9HCU0 757 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 TSPOAP1O95153 1857 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 E7ENQ6 273 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 NR1I2O75469 434 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 HEXIM1O94992 359 aaKnown RBP14.46□□□□□ -0.09
USP40-208ENST00000450966 DHX9Q08211 1270 aaKnown RBP14.46□□□□□ -0.09
USP40-208ENST00000450966 TMTC3Q6ZXV5 915 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 ANKRD27Q96NW4 1050 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 EPN3Q9H201 632 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 TYW1Q9NV66 732 aaKnown RBP14.46□□□□□ -0.09
USP40-208ENST00000450966 NDUFA13Q9P0J0 144 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 MKL2Q9ULH7 1088 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 WDR17Q8IZU2 1322 aa14.46□□□□□ -0.09
USP40-208ENST00000450966 KCNA3P22001 575 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 ADALQ6DHV7 355 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 CCDC84Q86UT8 332 aaPredicted RBP14.46□□□□□ -0.1
USP40-208ENST00000450966 TRIML1Q8N9V2 468 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 SGSM3Q96HU1 749 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 EFHD1Q9BUP0 239 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 GIMAP4Q9NUV9 329 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 ZFATQ9P243 1243 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 NOVA2Q9UNW9 492 aaKnown RBP14.46□□□□□ -0.1
USP40-208ENST00000450966 FRMD4BQ9Y2L6 1034 aa14.46□□□□□ -0.1
USP40-208ENST00000450966 H0Y3Z8 333 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 CNGA1P29973 690 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 ICA1Q05084 483 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 ANKRD35Q8N283 1001 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 RASGRF2O14827 1237 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 DNAJC6O75061 913 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 ZBED4O75132 1171 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 MCF2P10911 925 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 SMTNP53814 917 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 RAPGEF1Q13905 1077 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 RNF217Q8TC41 542 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 PPP4R1Q8TF05 950 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 DACT3Q96B18 629 aaPredicted RBP14.45□□□□□ -0.1
USP40-208ENST00000450966 NUDCD1Q96RS6 583 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 ELAC2Q9BQ52 826 aaKnown RBP14.45□□□□□ -0.1
USP40-208ENST00000450966 KIAA0232Q92628 1395 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 KRT4P19013 534 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 GLE1Q53GS7 698 aaKnown RBP14.45□□□□□ -0.1
USP40-208ENST00000450966 DNAJC10Q8IXB1 793 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 SNRNP27Q8WVK2 155 aaKnown RBP14.45□□□□□ -0.1
USP40-208ENST00000450966 OPTNQ96CV9 577 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 MEIS3Q99687 375 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 VAMP4O75379 141 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 DAB1O75553 588 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 GJA8P48165 433 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 RCN2Q14257 317 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 ECT2Q9H8V3 914 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 EPB41L5Q9HCM4 733 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 AP1G2O75843 785 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 PPP2R5BQ15173 497 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 MAGEB6Q8N7X4 407 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 SNX29Q8TEQ0 813 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 LZTS2Q9BRK4 669 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 BCS1LQ9Y276 419 aa14.45□□□□□ -0.1
USP40-208ENST00000450966 SPOPO43791 374 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 HSPA9P38646 679 aaKnown RBP14.44□□□□□ -0.1
USP40-208ENST00000450966 NSMCE1Q8WV22 266 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 TMEM60Q9H2L4 133 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 GPHNQ9NQX3 736 aaPredicted RBP14.44□□□□□ -0.1
USP40-208ENST00000450966 DDX28Q9NUL7 540 aaKnown RBP14.44□□□□□ -0.1
USP40-208ENST00000450966 DKK3Q9UBP4 350 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 POSTNQ15063 836 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 GRAMD1BQ3KR37 738 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 TTC1Q99614 292 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 SIKE1Q9BRV8 207 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 NDEL1Q9GZM8 345 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms