RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 BARHL2Q9NY43 387 aa20.51■□□□□ 0.87
USP48-204ENST00000400301 HYOU1Q9Y4L1 999 aa20.51■□□□□ 0.87
USP48-204ENST00000400301 COL5A2P05997 1499 aaPredicted RBP20.51■□□□□ 0.87
USP48-204ENST00000400301 CACNB1Q02641 598 aaPredicted RBP20.5■□□□□ 0.87
USP48-204ENST00000400301 ATRIPQ8WXE1 791 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 BICD1Q96G01 975 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 CEP95Q96GE4 821 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 FMN2Q9NZ56 1722 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 GOLGA6CA6NDK9 693 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 CEP104O60308 925 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 GOLGA6DP0CG33 693 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 CYP4A11Q02928 519 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 DPYDQ12882 1025 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 GOLGA6AQ9NYA3 693 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 MAEAQ7L5Y9 396 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 FBXO33Q7Z6M2 555 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 KLHL7Q8IXQ5 586 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 ANAPC4Q9UJX5 808 aa20.5■□□□□ 0.87
USP48-204ENST00000400301 GSTTP1A0A1W2PQM5 241 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 PPEF1O14829 653 aaPredicted RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 MICALCLQ6ZW33 695 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 TPH2Q8IWU9 490 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 IFT20Q8IY31 132 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 NHEJ1Q9H9Q4 299 aaPredicted RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 TCP1P17987 556 aaKnown RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 FKBP3Q00688 224 aaKnown RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 NR1I3Q14994 352 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 SMCR8Q8TEV9 937 aaPredicted RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 CCDC17Q96LX7 622 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 SPATA31A1Q5TZJ5 1347 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 ZMYND10O75800 440 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 XRCC5P13010 732 aaKnown RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 FBXO11Q86XK2 927 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 VGLL2Q8N8G2 317 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 LINC00116Q8NCU8 138 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 ADD3Q9UEY8 706 aaKnown RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 TSKSQ9UJT2 592 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 TTC26A0AVF1 554 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 ARHGEF35A5YM69 484 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 EBAG9O00559 213 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 FLOT1O75955 427 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 PRPHP41219 470 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 RPS6KA1Q15418 735 aa20.49■□□□□ 0.87
USP48-204ENST00000400301 FAM217BQ9NTX9 383 aaPredicted RBP20.49■□□□□ 0.87
USP48-204ENST00000400301 CNTNAP5Q8WYK1 1306 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 H0YIN7 160 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 hCG_1984214I3L0E3 225 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 C10orf67Q8IYJ2 551 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 ZNF713Q8N859 430 aaPredicted RBP20.48■□□□□ 0.87
USP48-204ENST00000400301 SWAP70Q9UH65 585 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 KLRK1P26718 216 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 RASSF7Q02833 373 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 SBK1Q52WX2 424 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 NDST4Q9H3R1 872 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 DDX39AO00148 427 aaKnown RBP20.48■□□□□ 0.87
USP48-204ENST00000400301 TADA3O75528 432 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 ZSCAN26Q16670 478 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 ADGRA1Q86SQ6 560 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 SLFN12Q8IYM2 578 aa20.48■□□□□ 0.87
USP48-204ENST00000400301 PABPC4Q13310 644 aaKnown RBP eCLIP20.47■□□□□ 0.871e-12■□□□□ 9.6
USP48-204ENST00000400301 RIOK1Q9BRS2 568 aaKnown RBP20.47■□□□□ 0.87
USP48-204ENST00000400301 RIC8AQ9NPQ8 531 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 POTEMA6NI47 508 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 TNFAIP3P21580 790 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 CCDC170Q8IYT3 715 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 TERF2Q15554 542 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 SLC4A9Q96Q91 983 aa20.47■□□□□ 0.87
USP48-204ENST00000400301 MORC2Q9Y6X9 1032 aaPredicted RBP20.47■□□□□ 0.87
USP48-204ENST00000400301 FAM170AA1A519 330 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 GCFC2P16383 781 aaKnown RBP20.46■□□□□ 0.87
USP48-204ENST00000400301 FXR1P51114 621 aaKnown RBP eCLIP20.46■□□□□ 0.875e-7■■■■□ 25.7
USP48-204ENST00000400301 MSL1Q68DK7 614 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 RABEP2Q9H5N1 569 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 TMEM260Q9NX78 707 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 STK24Q9Y6E0 443 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 NEFHP12036 1026 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 EIF4A3P38919 411 aaKnown RBP20.46■□□□□ 0.87
USP48-204ENST00000400301 SEC23AQ15436 765 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 FOXP4Q8IVH2 680 aaPredicted RBP20.46■□□□□ 0.87
USP48-204ENST00000400301 AMNQ9BXJ7 453 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 EXOC3O60645 756 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 PTPROQ16827 1216 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 CC2D1AQ6P1N0 951 aaPredicted RBP20.46■□□□□ 0.87
USP48-204ENST00000400301 PCDHA6Q9UN73 950 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 PCDHA8Q9Y5H6 950 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 PDE6BP35913 854 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 NFIXQ14938 502 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 PPP4R3AQ6IN85 833 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 USP37Q86T82 979 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 ELOA2Q8IYF1 753 aaPredicted RBP20.46■□□□□ 0.87
USP48-204ENST00000400301 NBPF3Q9H094 633 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 SH2D4AQ9H788 454 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 MRFAP1Q9Y605 127 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 TCHHQ07283 1943 aa20.46■□□□□ 0.87
USP48-204ENST00000400301 RDH13Q8NBN7 331 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 NEDD1Q8NHV4 660 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 DBNDD1Q9H9R9 158 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 FAM208AQ9UK61 1670 aaKnown RBP20.45■□□□□ 0.86
USP48-204ENST00000400301 BAZ2BQ9UIF8 2168 aaKnown RBP20.45■□□□□ 0.86
USP48-204ENST00000400301 KIFC2Q96AC6 838 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms