RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 LIMA1Q9UHB6 759 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 MRC1P22897 1456 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 ZNF335Q9H4Z2 1342 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 ZC3H4Q9UPT8 1303 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 TOPAZ1Q8N9V7 1692 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 PSMD14O00487 310 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 ADAMTS3O15072 1205 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 MTIF2P46199 727 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 KRT83P78385 493 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 SETQ01105 290 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 SPA17Q15506 151 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 TTLL11Q8NHH1 800 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 UCN2Q96RP3 112 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 FAM207AQ9NSI2 230 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 FAM184BQ9ULE4 1060 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 MED1Q15648 1581 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 RGPD2P0DJD1 1756 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 N4BP2Q86UW6 1770 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 NKRFO15226 690 aaKnown RBP eCLIP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 EIF3HO15372 352 aaKnown RBP eCLIP11.01□□□□□ -0.657e-9■■□□□ 12.4
PTCHD4-202ENST00000398738 HSF2BPO75031 334 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 CYLC1P35663 651 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 SPAG1Q07617 926 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 ACTN3Q08043 901 aaPredicted RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 CEP57Q86XR8 500 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 HPS3Q969F9 1004 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 KRT23Q9C075 422 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 CAPN6Q9Y6Q1 641 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 TNKSO95271 1327 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 POTEB3A0JP26 581 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 GSG1L2A8MUP6 293 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 MAP3K12Q12852 859 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 POTEBQ6S5H4 581 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 NACAP1Q9BZK3 213 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 PPANQ9NQ55 473 aaKnown RBP11□□□□□ -0.65
PTCHD4-202ENST00000398738 BCCIPQ9P287 314 aaKnown RBP eCLIP11□□□□□ -0.65
PTCHD4-202ENST00000398738 RWDD2AQ9UIY3 292 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 KDM3BQ7LBC6 1761 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 MYH15Q9Y2K3 1946 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 RIMBP2O15034 1052 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 IFT88Q13099 833 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 C2CD5Q86YS7 1000 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 IRF2BP1Q8IU81 584 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 KCTD17Q8N5Z5 321 aa11□□□□□ -0.65
PTCHD4-202ENST00000398738 CCDC43Q96MW1 224 aaKnown RBP11□□□□□ -0.65
PTCHD4-202ENST00000398738 FRMD3A2A2Y4 597 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 ANKRD18BA2A2Z9 1011 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 AKR1B10O60218 316 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 NNTQ13423 1086 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 UBE3CQ15386 1083 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 CCDC178Q5BJE1 867 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 TTMPQ5BVD1 217 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 TMC4Q7Z404 712 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 MAATS1Q7Z4T9 603 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 SH3RF1Q7Z6J0 888 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 CSGALNACT2Q8N6G5 542 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 MMRN2Q9H8L6 949 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 TRMT112Q9UI30 125 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 NFU1Q9UMS0 254 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 WDR19Q8NEZ3 1342 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 OVOS2A0A0G2JMS6 1433 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 NMT2O60551 498 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 SCNN1AP37088 669 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 GCGRP47871 477 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 CT47A1Q5JQC4 288 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 SPATA4Q8NEY3 305 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 TUBGCP2Q9BSJ2 902 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 ITIH6Q6UXX5 1313 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 SOS2Q07890 1332 aaPredicted RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 RDXP35241 583 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 HLFQ16534 295 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 IFIT1BQ5T764 474 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 PAPD7Q5XG87 772 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 GBP6Q6ZN66 633 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 SPATA5Q8NB90 893 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 IFIH1Q9BYX4 1025 aaKnown RBP10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 CNNM2Q9H8M5 875 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 RIPOR2Q9Y4F9 1068 aa10.99□□□□□ -0.65
PTCHD4-202ENST00000398738 STK36Q9NRP7 1315 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 FAM153BP0C7A2 387 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 BCAMP50895 628 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 ARID5AQ03989 594 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 RASGRF1Q13972 1273 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 TRIM14Q14142 442 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 TRADDQ15628 312 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 IL17AQ16552 155 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 FAM153CQ494X1 144 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 ZNF658Q5TYW1 1059 aaPredicted RBP10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 C8orf74Q6P047 294 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 RNF19BQ6ZMZ0 732 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 SULF1Q8IWU6 871 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 ELOA2Q8IYF1 753 aaPredicted RBP10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 KIRREL3Q8IZU9 778 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 MSL3Q8N5Y2 521 aaKnown RBP10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 FERMT2Q96AC1 680 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 RNPC3Q96LT9 517 aaKnown RBP10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 ZIM3Q96PE6 472 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 FAM153AQ9UHL3 310 aa10.98□□□□□ -0.65
PTCHD4-202ENST00000398738 GRIN2DO15399 1336 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms