RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 RABGGTBP53611 331 aa18.21■□□□□ 0.51
CHMP3-202ENST00000393773 CTDSPL2Q05D32 466 aa18.21■□□□□ 0.51
CHMP3-202ENST00000393773 CCDC85BQ15834 202 aaPredicted RBP18.21■□□□□ 0.51
CHMP3-202ENST00000393773 DIEXFQ68CQ4 756 aaKnown RBP18.21■□□□□ 0.51
CHMP3-202ENST00000393773 NSMFQ6X4W1 530 aa18.21■□□□□ 0.51
CHMP3-202ENST00000393773 SCLYQ96I15 445 aa18.21■□□□□ 0.51
CHMP3-202ENST00000393773 RANBP17Q9H2T7 1088 aaKnown RBP18.21■□□□□ 0.51
CHMP3-202ENST00000393773 TSPY2A6NKD2 308 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 COL9A1P20849 921 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 IGFBP4P22692 258 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 ALDH5A1P51649 535 aaPredicted RBP18.2■□□□□ 0.5
CHMP3-202ENST00000393773 DUSP28Q4G0W2 176 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 PPP2R2DQ66LE6 453 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 INCENPQ9NQS7 918 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 PCDHA11Q9Y5I1 949 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 SALL3Q9BXA9 1300 aa18.2■□□□□ 0.5
CHMP3-202ENST00000393773 NFIBO00712 420 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 ERC2O15083 957 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 MYOGP15173 224 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 MRPS5P82675 430 aaKnown RBP18.19■□□□□ 0.5
CHMP3-202ENST00000393773 PURAQ00577 322 aaKnown RBP18.19■□□□□ 0.5
CHMP3-202ENST00000393773 DCAF4Q8WV16 495 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 TRMT13Q9NUP7 481 aaKnown RBP18.19■□□□□ 0.5
CHMP3-202ENST00000393773 ANAPC4Q9UJX5 808 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 SLC4A7Q9Y6M7 1214 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 TNKSO95271 1327 aa18.19■□□□□ 0.5
CHMP3-202ENST00000393773 ORC4O43929 436 aa18.18■□□□□ 0.5
CHMP3-202ENST00000393773 CCDC96Q2M329 555 aa18.18■□□□□ 0.5
CHMP3-202ENST00000393773 BTNL9Q6UXG8 535 aa18.18■□□□□ 0.5
CHMP3-202ENST00000393773 SLC30A10Q6XR72 485 aa18.18■□□□□ 0.5
CHMP3-202ENST00000393773 KIAA1211Q6ZU35 1233 aa18.18■□□□□ 0.5
CHMP3-202ENST00000393773 UHRF1Q96T88 793 aaPredicted RBP18.18■□□□□ 0.5
CHMP3-202ENST00000393773 LOC102724159A0A0B4J2E5 919 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 RBM47A0AV96 593 aaKnown RBP18.17■□□□□ 0.5
CHMP3-202ENST00000393773 PFKMP08237 780 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 CYP2C9P11712 490 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 ATP2A2P16615 1042 aaKnown RBP18.17■□□□□ 0.5
CHMP3-202ENST00000393773 BAATQ14032 418 aaPredicted RBP18.17■□□□□ 0.5
CHMP3-202ENST00000393773 TTLL4Q14679 1199 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 PWP2Q15269 919 aaKnown RBP18.17■□□□□ 0.5
CHMP3-202ENST00000393773 VPS53Q5VIR6 699 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 TTBK2Q6IQ55 1244 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 RPUSD2Q8IZ73 545 aaKnown RBP18.17■□□□□ 0.5
CHMP3-202ENST00000393773 POLR3EQ9NVU0 708 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 MTMR7Q9Y216 660 aa18.17■□□□□ 0.5
CHMP3-202ENST00000393773 ZBBXA8MT70 800 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 FGRP09769 529 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 MX1P20591 662 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 SLC16A2P36021 539 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 SYDE2Q5VT97 1194 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 WDR11Q9BZH6 1224 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 ADD3Q9UEY8 706 aaKnown RBP18.16■□□□□ 0.5
CHMP3-202ENST00000393773 RAPGEFL1Q9UHV5 662 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 SIP14410 1827 aa18.16■□□□□ 0.5
CHMP3-202ENST00000393773 RANBP6O60518 1105 aaKnown RBP18.15■□□□□ 0.5
CHMP3-202ENST00000393773 CA3P07451 260 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 CPT1AP50416 773 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 OR6J1Q8NGC5 347 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 CLEC4DQ8WXI8 215 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 PCDHB15Q9Y5E8 787 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 FRMPD2Q68DX3 1309 aaPredicted RBP18.15■□□□□ 0.5
CHMP3-202ENST00000393773 BRWD1Q9NSI6 2320 aa18.15■□□□□ 0.5
CHMP3-202ENST00000393773 MYL3P08590 195 aa18.14■□□□□ 0.49
CHMP3-202ENST00000393773 SUPT20HL2P0C7V6 817 aa18.14■□□□□ 0.49
CHMP3-202ENST00000393773 EDNRBP24530 442 aa18.14■□□□□ 0.49
CHMP3-202ENST00000393773 DEFB128Q7Z7B8 93 aa18.14■□□□□ 0.49
CHMP3-202ENST00000393773 TMEM47Q9BQJ4 181 aa18.14■□□□□ 0.49
CHMP3-202ENST00000393773 MTG1Q9BT17 334 aaPredicted RBP18.14■□□□□ 0.49
CHMP3-202ENST00000393773 PTPDC1A2A3K4 754 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 EPOPA6NHQ4 379 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 PITPNM1O00562 1244 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 ARHGEF15O94989 841 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 TFF2Q03403 129 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 ALX1Q15699 326 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 MICALL1Q8N3F8 863 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 PPP1R13LQ8WUF5 828 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 NECAB3Q96P71 396 aaPredicted RBP18.13■□□□□ 0.49
CHMP3-202ENST00000393773 SLC9A7Q96T83 725 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 ZMYM6O95789 1325 aa18.13■□□□□ 0.49
CHMP3-202ENST00000393773 MYH7BA7E2Y1 1941 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 PDHBP11177 359 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 TOP1P11387 765 aaKnown RBP18.12■□□□□ 0.49
CHMP3-202ENST00000393773 BMP1P13497 986 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 POU3F3P20264 500 aaPredicted RBP18.12■□□□□ 0.49
CHMP3-202ENST00000393773 RFC2P35250 354 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 PPP2R5BQ15173 497 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 NBPF20Q3BBV1 942 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 TMEM67Q5HYA8 995 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 NFRKBQ6P4R8 1299 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 IL27Q8NEV9 243 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 GPCPD1Q9NPB8 672 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 MTCH2Q9Y6C9 303 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 WDR19Q8NEZ3 1342 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 RAD50Q92878 1312 aa18.12■□□□□ 0.49
CHMP3-202ENST00000393773 A6NJR5 290 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 RFXAPO00287 272 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 NKRFO15226 690 aaKnown RBP eCLIP18.11■□□□□ 0.49
CHMP3-202ENST00000393773 CALML3P27482 149 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 KCNQ1P51787 676 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 RPS6P62753 249 aaKnown RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms