RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ZNF185O15231 689 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 ZMYND10O75800 440 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 BAG3O95817 575 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 ACTN2P35609 894 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 SEMA3FQ13275 785 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 MIIPQ5JXC2 388 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 KRT25Q7Z3Z0 450 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 FAM71BQ8TC56 605 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 VAT1LQ9HCJ6 419 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 JADE2Q9NQC1 790 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 EIF3CLB5ME19 914 aaKnown RBP24.53■■□□□ 1.52
SHMT1-201ENST00000316694 RASA1P20936 1047 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 LEKR1Q6ZMV7 388 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 CCDC170Q8IYT3 715 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 EIF3CQ99613 913 aaKnown RBP24.53■■□□□ 1.52
SHMT1-201ENST00000316694 C7orf25Q9BPX7 421 aa24.53■■□□□ 1.52
SHMT1-201ENST00000316694 ROBO3Q96MS0 1386 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 IDEP14735 1019 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 CKAP4Q07065 602 aaKnown RBP24.52■■□□□ 1.52
SHMT1-201ENST00000316694 FKBP15Q5T1M5 1219 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 TMED8Q6PL24 325 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-201ENST00000316694 WDR66Q8TBY9 1149 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 GDAP1L1Q96MZ0 367 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 SLC39A2Q9NP94 309 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 USP17L2Q6R6M4 530 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 ZNF662Q6ZS27 426 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 NEK8Q86SG6 692 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 C6orf50Q9HD87 102 aa24.52■■□□□ 1.52
SHMT1-201ENST00000316694 CWC15Q9P013 229 aaKnown RBP24.52■■□□□ 1.52
SHMT1-201ENST00000316694 KIF5AQ12840 1032 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 LZTS2Q9BRK4 669 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 PLEKP08567 350 aaPredicted RBP24.51■■□□□ 1.51
SHMT1-201ENST00000316694 AMPD3Q01432 767 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 KRT26Q7Z3Y9 468 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 KIAA0895Q8NCT3 520 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 CCDC42Q96M95 316 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 MED4Q9NPJ6 270 aa24.51■■□□□ 1.51
SHMT1-201ENST00000316694 IRS2Q9Y4H2 1338 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 MCM3P25205 808 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 CCDC96Q2M329 555 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 MAP9Q49MG5 647 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 SOGA3Q5TF21 947 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 CNNM4Q6P4Q7 775 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 ARHGEF1Q92888 912 aaKnown RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 GPR101Q96P66 508 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 SPZ1Q9BXG8 430 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 BIN2Q9UBW5 565 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 LRWD1Q9UFC0 647 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 GNA11P29992 359 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 NT5C2P49902 561 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 GSTO1P78417 241 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 SPA17Q15506 151 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 TBCKQ8TEA7 893 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 SECISBP2LQ93073 1101 aaKnown RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 RRP36Q96EU6 259 aaKnown RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 CALML4Q96GE6 196 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 RPGRIP1Q96KN7 1286 aa24.5■■□□□ 1.51
SHMT1-201ENST00000316694 SEC63Q9UGP8 760 aaKnown RBP24.5■■□□□ 1.51
SHMT1-201ENST00000316694 PDE2AO00408 941 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 TXKP42681 527 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 POTEDQ86YR6 584 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 GPIHBP1Q8IV16 184 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 ZSCAN29Q8IWY8 852 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 SMCR8Q8TEV9 937 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 C8orf37Q96NL8 207 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 ERGIC2Q96RQ1 377 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 EYA3Q99504 573 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 MMTAG2Q9BU76 263 aaKnown RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 SEMA6BQ9H3T3 888 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 FAM204AQ9H8W3 233 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 ZNF831Q5JPB2 1677 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 VAV2P52735 878 aa24.49■■□□□ 1.51
SHMT1-201ENST00000316694 RC3H1Q5TC82 1133 aaKnown RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 GSPT2Q8IYD1 628 aaKnown RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 FAM207AQ9NSI2 230 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-201ENST00000316694 ZNF263O14978 683 aa24.48■■□□□ 1.51
SHMT1-201ENST00000316694 C2orf54Q08AI8 447 aa24.48■■□□□ 1.51
SHMT1-201ENST00000316694 NFIXQ14938 502 aa24.48■■□□□ 1.51
SHMT1-201ENST00000316694 RTCBQ9Y3I0 505 aaKnown RBP24.48■■□□□ 1.51
SHMT1-201ENST00000316694 ANO9A1A5B4 782 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 RNF40O75150 1001 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 C2CD5Q86YS7 1000 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 ZFP91Q96JP5 570 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-201ENST00000316694 DRC1Q96MC2 740 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 PIGSQ96S52 555 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 VIPAS39Q9H9C1 493 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 TMEM260Q9NX78 707 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 NAV1Q8NEY1 1877 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 A0A1W2PQJ5 194 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 TARSL2A2RTX5 802 aaKnown RBP24.47■■□□□ 1.51
SHMT1-201ENST00000316694 PPP1R2P41236 205 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 CDK8P49336 464 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 PURBQ96QR8 312 aaKnown RBP24.47■■□□□ 1.51
SHMT1-201ENST00000316694 HINFPQ9BQA5 517 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 ZNF287Q9HBT7 754 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 CCNL1Q9UK58 526 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-201ENST00000316694 HPCAL4Q9UM19 191 aa24.47■■□□□ 1.51
SHMT1-201ENST00000316694 ERCC3P19447 782 aa24.46■■□□□ 1.51
SHMT1-201ENST00000316694 SV2BQ7L1I2 683 aa24.46■■□□□ 1.51
SHMT1-201ENST00000316694 DYMQ7RTS9 669 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms