RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TRIM60Q495X7 471 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 ATP6V1E2Q96A05 226 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 MID2Q9UJV3 735 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 SYCE1LA8MT33 242 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 ACTN1P12814 892 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 CTDSPL2Q05D32 466 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 FAM102BQ5T8I3 360 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 MT-ND3P03897 115 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 FAM178BQ8IXR5 827 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 MAML1Q92585 1016 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 SUCLA2Q9P2R7 463 aaPredicted RBP15.05■□□□□ -0
CSPG4-201ENST00000308508 TNNQ9UQP3 1299 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 JAG2Q9Y219 1238 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 KDRP35968 1356 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 ZMYM6O95789 1325 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 SMCO2A6NFE2 343 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 K7ENM7 598 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 ITGA6P23229 1130 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 PPM1KQ8N3J5 372 aa15.05■□□□□ -0
CSPG4-201ENST00000308508 ABCC1P33527 1531 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ZMYM3Q14202 1370 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ZBED4O75132 1171 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 PYGLP06737 847 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 NCF2P19878 526 aaPredicted RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 HIBADHP31937 336 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 NOP14P78316 857 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 DHX9Q08211 1270 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 NLRX1Q86UT6 975 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ATP8A2Q9NTI2 1148 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 AATFQ9NY61 560 aaKnown RBP eCLIP15.04■□□□□ -0
CSPG4-201ENST00000308508 PCDHA12Q9UN75 941 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 CASP14P31944 242 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 TIMM10P62072 90 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 PTK2Q05397 1052 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ADAM9Q13443 819 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 MTHFSDQ2M296 383 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 RASGRF2O14827 1237 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 TOM1L1O75674 476 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 PLTPP55058 493 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 MCUQ8NE86 351 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ENC1O14682 589 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 PIK3CAP42336 1068 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 RNF207Q6ZRF8 634 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 GPT2Q8TD30 523 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ATP6V0A1Q93050 837 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 RTCBQ9Y3I0 505 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 COL4A3BPQ9Y5P4 624 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 WDR7Q9Y4E6 1490 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 RIMBP2O15034 1052 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 NPR1P16066 1061 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 C2orf54Q08AI8 447 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 SLC17A8Q8NDX2 589 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 GDAP1Q8TB36 358 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 CNOT6LQ96LI5 555 aaKnown RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 FAM81BQ96LP2 452 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 TLK1Q9UKI8 766 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 SOS2Q07890 1332 aaPredicted RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 EXOC1LA0A1B0GW35 172 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 ZBTB24O43167 697 aaPredicted RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 TECP42680 631 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 NDUFA8P51970 172 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 FLOT2Q14254 428 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 MESDQ14696 234 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 MCF2L2Q86YR7 1114 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 RFX6Q8HWS3 928 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 BLIDQ8IZY5 108 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 TMCO5AQ8N6Q1 288 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 OLFM3Q96PB7 478 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 CHGBP05060 677 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 C4orf50Q6ZRC1 276 aa15.04■□□□□ -0
CSPG4-201ENST00000308508 TRPC5Q9UL62 973 aaPredicted RBP15.04■□□□□ -0
CSPG4-201ENST00000308508 H3BRJ5 948 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 IPO5O00410 1097 aaKnown RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 TRIM59Q8IWR1 403 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 ZBTB8OSQ8IWT0 167 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 NEK9Q8TD19 979 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 MMS19Q96T76 1030 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 TUBGCP2Q9BSJ2 902 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 GLE1Q53GS7 698 aaKnown RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 ARHGAP18Q8N392 663 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 GFM2Q969S9 779 aaKnown RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 METTL22Q9BUU2 404 aaPredicted RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 MRPL40Q9NQ50 206 aaKnown RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 PYCARDQ9ULZ3 195 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 MFAP3P55082 362 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 MYL7Q01449 175 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 HOOK2Q96ED9 719 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 TTC1Q99614 292 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 CUEDC2Q9H467 287 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 CLEC11AQ9Y240 323 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 TDRD7Q8NHU6 1098 aaKnown RBP15.03■□□□□ -0
CSPG4-201ENST00000308508 ZMYND12Q9H0C1 365 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 TMEM60Q9H2L4 133 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 STK17AQ9UEE5 414 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 ARHGAP10A1A4S6 786 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 CFBP00751 764 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 OR52Z1P0C646 297 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 CASP8Q14790 479 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 ZNF710Q8N1W2 664 aa15.03■□□□□ -0
CSPG4-201ENST00000308508 BABAM1Q9NWV8 329 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms