RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 KRT15P19012 456 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 CCDC62Q6P9F0 684 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 ATP8A2Q9NTI2 1148 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 NFU1Q9UMS0 254 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 KLRF2D3W0D1 207 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 EXOC3O60645 756 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 TCP11Q8WWU5 503 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 CEP152O94986 1710 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 A0A1B0GTH6 734 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 ACSBG1Q96GR2 724 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 FHOD1Q9Y613 1164 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 CDC25AP30304 524 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 PTPROQ16827 1216 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 VPS52Q8N1B4 723 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 LARP4BQ92615 738 aaKnown RBP21.18■□□□□ 0.98
USP48-201ENST00000308271 STRBPQ96SI9 672 aaKnown RBP21.18■□□□□ 0.98
USP48-201ENST00000308271 NDST4Q9H3R1 872 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 PCDHA12Q9UN75 941 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 CUL1Q13616 776 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 HNRNPLLQ8WVV9 542 aaKnown RBP21.18■□□□□ 0.98
USP48-201ENST00000308271 GDAQ9Y2T3 454 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 ADGRL3Q9HAR2 1447 aa21.18■□□□□ 0.98
USP48-201ENST00000308271 FTCDO95954 541 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 TSNARE1Q96NA8 513 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 MAP3K15Q6ZN16 1313 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 EXOC3L4Q17RC7 722 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 TBC1D10CQ8IV04 446 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 TC2NQ8N9U0 490 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 DISC1Q9NRI5 854 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 DAAM1Q9Y4D1 1078 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 TRIM37O94972 964 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 RPSAP08865 295 aaKnown RBP21.17■□□□□ 0.98
USP48-201ENST00000308271 EIF3BP55884 814 aaKnown RBP21.17■□□□□ 0.98
USP48-201ENST00000308271 DHX9Q08211 1270 aaKnown RBP21.17■□□□□ 0.98
USP48-201ENST00000308271 RASGRP2Q7LDG7 609 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.17■□□□□ 0.98
USP48-201ENST00000308271 STK17AQ9UEE5 414 aa21.17■□□□□ 0.98
USP48-201ENST00000308271 SALL3Q9BXA9 1300 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 KRT5P13647 590 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 RCAN1P53805 252 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 ARHGAP44Q17R89 818 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 C10orf76Q5T2E6 689 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 MYCT1Q8N699 235 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 MTA3Q9BTC8 594 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 PPP1R1BQ9UD71 204 aaPredicted RBP21.16■□□□□ 0.98
USP48-201ENST00000308271 FOXN1O15353 648 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 SERPING1P05155 500 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 LIN9Q5TKA1 542 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 HIBCHQ6NVY1 386 aaPredicted RBP21.16■□□□□ 0.98
USP48-201ENST00000308271 N4BP2L2Q92802 583 aaPredicted RBP21.16■□□□□ 0.98
USP48-201ENST00000308271 A2ML1A8K2U0 1454 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 GUCY2CP25092 1073 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 CUL4BQ13620 913 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 DDB1Q16531 1140 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 NOVA2Q9UNW9 492 aaKnown RBP21.16■□□□□ 0.98
USP48-201ENST00000308271 SOS2Q07890 1332 aaPredicted RBP21.16■□□□□ 0.98
USP48-201ENST00000308271 ALKQ9UM73 1620 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 AK9Q5TCS8 1911 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 ANKRD20A3Q5VUR7 823 aa21.16■□□□□ 0.98
USP48-201ENST00000308271 PALLDQ8WX93 1383 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 PRKAB2O43741 272 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 TBC1D8O95759 1140 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 CYB5R4Q7L1T6 521 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 ATP8A1Q9Y2Q0 1164 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 TTC26A0AVF1 554 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 CASP1P29466 404 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 PIH1D3Q9NQM4 214 aaKnown RBP21.15■□□□□ 0.98
USP48-201ENST00000308271 UBN2Q6ZU65 1347 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 NDC80O14777 642 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 CDC27P30260 824 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 IFNAR2P48551 515 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 LCORLQ8N3X6 602 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 NGLY1Q96IV0 654 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 EYA3Q99504 573 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 TFCP2L1Q9NZI6 479 aa21.15■□□□□ 0.98
USP48-201ENST00000308271 TROVE2P10155 538 aaKnown RBP eCLIP21.14■□□□□ 0.98
USP48-201ENST00000308271 UAP1Q16222 522 aaPredicted RBP21.14■□□□□ 0.98
USP48-201ENST00000308271 MUM1Q2TAK8 710 aa21.14■□□□□ 0.98
USP48-201ENST00000308271 NAA35Q5VZE5 725 aa21.14■□□□□ 0.98
USP48-201ENST00000308271 RASGRP4Q8TDF6 673 aa21.14■□□□□ 0.98
USP48-201ENST00000308271 SERPINA10Q9UK55 444 aa21.14■□□□□ 0.98
USP48-201ENST00000308271 COL4A3BPQ9Y5P4 624 aa21.14■□□□□ 0.98
USP48-201ENST00000308271 GYG1P46976 350 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 REXO1L1PQ8IX06 675 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 UHMK1Q8TAS1 419 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 CCDC110Q8TBZ0 833 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 SPATS2LQ9NUQ6 558 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 A0A1W2PQC6 194 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 ARHGEF35A5YM69 484 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 EIF6P56537 245 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 WDR44Q5JSH3 913 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 SGMS1Q86VZ5 419 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 MAPKAPK5Q8IW41 473 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 GSPT2Q8IYD1 628 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 PASKQ96RG2 1323 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 NRKQ7Z2Y5 1582 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 RUBCNQ92622 972 aa21.14■□□□□ 0.97
USP48-201ENST00000308271 MRRFQ96E11 262 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 TYW1Q9NV66 732 aaKnown RBP21.14■□□□□ 0.97
USP48-201ENST00000308271 HDAC6Q9UBN7 1215 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms