RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SYMPKQ92797 1274 aaKnown RBP16.96■□□□□ 0.31
SHH-201ENST00000297261 MMP10P09238 476 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 C2orf54Q08AI8 447 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 CYB5R4Q7L1T6 521 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 UHMK1Q8TAS1 419 aaKnown RBP16.96■□□□□ 0.31
SHH-201ENST00000297261 HOMER2Q9NSB8 354 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 FAM169AQ9Y6X4 670 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 KCNK3O14649 394 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 STIM2Q9P246 746 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 MYO1AQ9UBC5 1043 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 AP5Z1O43299 807 aa16.96■□□□□ 0.3
SHH-201ENST00000297261 ACTN4O43707 911 aaKnown RBP16.96■□□□□ 0.3
SHH-201ENST00000297261 SLC7A5Q01650 507 aa16.96■□□□□ 0.3
SHH-201ENST00000297261 IKBKGQ9Y6K9 419 aa16.96■□□□□ 0.3
SHH-201ENST00000297261 H7C1D1 291 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 NR5A1Q13285 461 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 USP40Q9NVE5 1235 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 GSG1L2A8MUP6 293 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 PDCLQ13371 301 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 PPP2R5AQ15172 486 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 SNCBQ16143 134 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 SPATS2Q86XZ4 545 aaKnown RBP16.95■□□□□ 0.3
SHH-201ENST00000297261 TRIM7Q9C029 511 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 USP17L8P0C7I0 530 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 LRCH2Q5VUJ6 765 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 KIAA0825Q8IV33 1275 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 LMNTD2Q8IXW0 634 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 TCP11Q8WWU5 503 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 GPCPD1Q9NPB8 672 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 TBC1D7Q9P0N9 293 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 ATP6V0A2Q9Y487 856 aa16.95■□□□□ 0.3
SHH-201ENST00000297261 LMO7Q8WWI1 1683 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PTGDRQ13258 359 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 SLC27A3Q5K4L6 730 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PEX26Q7Z412 305 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 MRRFQ96E11 262 aaKnown RBP16.94■□□□□ 0.3
SHH-201ENST00000297261 ZNF512BQ96KM6 892 aaPredicted RBP16.94■□□□□ 0.3
SHH-201ENST00000297261 UIMC1Q96RL1 719 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 GNA11P29992 359 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 GSTA5Q7RTV2 222 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 DPF2Q92785 391 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 DPH5Q9H2P9 285 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 EPB41L5Q9HCM4 733 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.94■□□□□ 0.3
SHH-201ENST00000297261 RGPD2P0DJD1 1756 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 SRGAP2O75044 1071 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PPP1R2P41236 205 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PLCB3Q01970 1234 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 ASIC2Q16515 512 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PPFIBP2Q8ND30 876 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 LOC102724159A0A0B4J2E5 919 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 NEDD9Q14511 834 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 PWP2Q15269 919 aaKnown RBP16.94■□□□□ 0.3
SHH-201ENST00000297261 TRIM68Q6AZZ1 485 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 NELFCDQ8IXH7 590 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 GSPT2Q8IYD1 628 aaKnown RBP16.94■□□□□ 0.3
SHH-201ENST00000297261 PNMA1Q8ND90 353 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 GSDMAQ96QA5 445 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 ALDH8A1Q9H2A2 487 aaPredicted RBP16.94■□□□□ 0.3
SHH-201ENST00000297261 TSKSQ9UJT2 592 aa16.94■□□□□ 0.3
SHH-201ENST00000297261 ALDH3A1P30838 453 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 LIFRP42702 1097 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 EXOSC10Q01780 885 aaKnown RBP16.93■□□□□ 0.3
SHH-201ENST00000297261 EHHADHQ08426 723 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 MTF1Q14872 753 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 TEKT1Q969V4 418 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHH-201ENST00000297261 B4DLN1 442 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 NDUFA10O95299 355 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 PPP1R14CQ8TAE6 165 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 KRT12Q99456 494 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 MTUS1Q9ULD2 1270 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 CCNT1O60563 726 aaKnown RBP16.93■□□□□ 0.3
SHH-201ENST00000297261 CDC25AP30304 524 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 NNTQ13423 1086 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 SFMBT2Q5VUG0 894 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 IQCGQ9H095 443 aaKnown RBP16.93■□□□□ 0.3
SHH-201ENST00000297261 AK9Q5TCS8 1911 aa16.93■□□□□ 0.3
SHH-201ENST00000297261 PCP11498 1178 aaKnown RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 STXBP4Q6ZWJ1 553 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 ANKRD42Q8N9B4 389 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 ERMNQ8TAM6 284 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 N4BP2L2Q92802 583 aaPredicted RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 PANX2Q96RD6 677 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 PPIP5K2O43314 1243 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 HEXIM1O94992 359 aaKnown RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 BAG6P46379 1132 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 RBM26Q5T8P6 1007 aaKnown RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 PRR5LQ6MZQ0 368 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 ADAT2Q7Z6V5 191 aaKnown RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 LARGE2Q8N3Y3 721 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 RGS16O15492 202 aaPredicted RBP16.92■□□□□ 0.3
SHH-201ENST00000297261 IFNAR2P48551 515 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 EPHB4P54760 987 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 KSR1Q8IVT5 923 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 STAG1Q8WVM7 1258 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 DYNLL2Q96FJ2 89 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 TUBGCP2Q9BSJ2 902 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 DBNDD1Q9H9R9 158 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 SLC8A1P32418 973 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms