RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 RPS6KA2Q15349 733 aa12.55□□□□□ -0.4
USP53-201ENST00000274030 KCTD16Q68DU8 428 aa12.55□□□□□ -0.4
USP53-201ENST00000274030 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
USP53-201ENST00000274030 KCNG1Q9UIX4 513 aa12.55□□□□□ -0.4
USP53-201ENST00000274030 RGS12O14924 1447 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 PPEF1O14829 653 aaPredicted RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 SRGAP1Q7Z6B7 1085 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 LMNTD2Q8IXW0 634 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 NSUN7Q8NE18 718 aaKnown RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 PIGSQ96S52 555 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 HAUS4Q9H6D7 363 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 CARMIL3Q8ND23 1372 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 SLC39A14Q15043 492 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 DPY19L2Q6NUT2 758 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 USP17L2Q6R6M4 530 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 SMAP1Q8IYB5 467 aaPredicted RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 LARP4BQ92615 738 aaKnown RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 DCPSQ96C86 337 aaKnown RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 ARHGAP42A6NI28 874 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 USP17L8P0C7I0 530 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 NSFP46459 744 aaKnown RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 CLNS1AP54105 237 aaKnown RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 PHLDB2Q86SQ0 1253 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 GOLGA5Q8TBA6 731 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 TBCKQ8TEA7 893 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 ZNF577Q9BSK1 485 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 XDHP47989 1333 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 BFSP1Q12934 665 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 C11orf57Q6ZUT1 292 aaPredicted RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 EEPD1Q7L9B9 569 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 P3H4Q92791 437 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 IQCDQ96DY2 449 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 AIFM3Q96NN9 605 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 GPR101Q96P66 508 aaPredicted RBP12.54□□□□□ -0.4
USP53-201ENST00000274030 MYOM2P54296 1465 aa12.54□□□□□ -0.4
USP53-201ENST00000274030 ARHGAP25P42331 645 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 GALNT17Q6IS24 598 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 OSBP2Q969R2 916 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 RPGRIP1Q96KN7 1286 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 METTL14Q9HCE5 456 aaKnown RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 RNF123Q5XPI4 1314 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 BRD3Q15059 726 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SLC35F6Q8N357 371 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 MRFAP1L1Q96HT8 127 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SCYL1Q96KG9 808 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 STAP2Q9UGK3 403 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 MAGED2Q9UNF1 606 aaPredicted RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 RAD17O75943 681 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 RFX1P22670 979 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 MYL7Q01449 175 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 CNKSR1Q969H4 720 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 PPP1R16BQ96T49 567 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 PCDHA4Q9UN74 947 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 DNMT1P26358 1616 aaKnown RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 TTC36A6NLP5 189 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 A6NNZ2 444 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 H7C0C1 242 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SERPINB2P05120 415 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 ATP5OP48047 213 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SATB1Q01826 763 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 PPP2R5AQ15172 486 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 TUBB8Q3ZCM7 444 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SLC5A4Q9NY91 659 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 INO80B-WBP1J3KQ70 363 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 N4BP1O75113 896 aaKnown RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 RNF8O76064 485 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 TROVE2P10155 538 aaKnown RBP eCLIP12.53□□□□□ -0.4
USP53-201ENST00000274030 TCP1P17987 556 aaKnown RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 ZSCAN26Q16670 478 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 KMT5BQ4FZB7 885 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 SH2D4BQ5SQS7 431 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 MIGA2Q7L4E1 593 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 ARHGAP24Q8N264 748 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 INO80BQ9C086 356 aaPredicted RBP12.53□□□□□ -0.4
USP53-201ENST00000274030 NRBP2Q9NSY0 501 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 PCDHB4Q9Y5E5 795 aa12.53□□□□□ -0.4
USP53-201ENST00000274030 A0A1B0GUA9 196 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 POC1B-GALNT4F8VUJ3 575 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 LPXNO60711 386 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 FMNL1O95466 1100 aaPredicted RBP12.52□□□□□ -0.4
USP53-201ENST00000274030 CXCR5P32302 372 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 SARNPP82979 210 aaKnown RBP12.52□□□□□ -0.4
USP53-201ENST00000274030 RBL2Q08999 1139 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 KRT26Q7Z3Y9 468 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 MIPOL1Q8TD10 442 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 FAM193BQ96PV7 902 aaPredicted RBP12.52□□□□□ -0.4
USP53-201ENST00000274030 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.52□□□□□ -0.4
USP53-201ENST00000274030 EFCC1Q9HA90 598 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 CD2APQ9Y5K6 639 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 TTLL1O95922 423 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 OATP04181 439 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 SNAP25P60880 206 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 NLGN1Q8N2Q7 840 aa12.52□□□□□ -0.4
USP53-201ENST00000274030 QTRT2Q9H974 415 aaKnown RBP12.52□□□□□ -0.4
USP53-201ENST00000274030 PALM3A6NDB9 673 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 ATF2P15336 505 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 ADD2P35612 726 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 GABPB1Q06547 395 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 SNX1Q13596 522 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 TSNAXIP1Q2TAA8 658 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms