RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 WHRNQ9P202 907 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 SF3B6Q9Y3B4 125 aaKnown RBP7.16□□□□□ -1.26
CD44-239ENST00000639002 NUDT19A8MXV4 375 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 VAMP4O75379 141 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 EPHX1P07099 455 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 CD3EP07766 207 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 PI3P19957 117 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 CASP7P55210 303 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 SLC7A5Q01650 507 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 IGDCC3Q8IVU1 814 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 NAT16Q8N8M0 369 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 OR6P1Q8NGX9 317 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 FGD4Q96M96 766 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 TGIF2Q9GZN2 237 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 SLC12A7Q9Y666 1083 aa7.15□□□□□ -1.26
CD44-239ENST00000639002 ABLIM1O14639 778 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 POU4F1Q01851 419 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 ZNF385BQ569K4 471 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 TMC6Q7Z403 805 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 MZB1Q8WU39 189 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 DACT3Q96B18 629 aaPredicted RBP7.14□□□□□ -1.27
CD44-239ENST00000639002 SEC16BQ96JE7 1060 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 PLA2G2DQ9UNK4 145 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 PCDHA5Q9Y5H7 936 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 HCFC2Q9Y5Z7 792 aa7.14□□□□□ -1.27
CD44-239ENST00000639002 IRS2Q9Y4H2 1338 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 AURKAO14965 403 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 HEATR6Q6AI08 1181 aaKnown RBP7.13□□□□□ -1.27
CD44-239ENST00000639002 CYP2R1Q6VVX0 501 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 ARHGEF39Q8N4T4 335 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 NLGN2Q8NFZ4 835 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 C20orf173Q96LM9 149 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 KRTAP4-9Q9BYQ8 210 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 IRAK3Q9Y616 596 aa7.13□□□□□ -1.27
CD44-239ENST00000639002 PPP1R11O60927 126 aaPredicted RBP7.12□□□□□ -1.27
CD44-239ENST00000639002 DBHP09172 617 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 INHBBP09529 407 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 NCKAP1LP55160 1127 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 PPP2R5EQ16537 467 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 PLEKHN1Q494U1 663 aaPredicted RBP7.12□□□□□ -1.27
CD44-239ENST00000639002 RCSD1Q6JBY9 416 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 JAMLQ86YT9 394 aa7.12□□□□□ -1.27
CD44-239ENST00000639002 CGGBP1Q9UFW8 167 aaPredicted RBP7.12□□□□□ -1.27
CD44-239ENST00000639002 FBLN1P23142 703 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 MAPKAPK2P49137 400 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 DPY19L1Q2PZI1 675 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 LILRA6Q6PI73 481 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 ADAT2Q7Z6V5 191 aaKnown RBP7.11□□□□□ -1.27
CD44-239ENST00000639002 FAM129CQ86XR2 697 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 RCC1LQ96I51 464 aaKnown RBP7.11□□□□□ -1.27
CD44-239ENST00000639002 KCNC2Q96PR1 638 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 PDLIM7Q9NR12 457 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 FBLN5Q9UBX5 448 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 RAPGEFL1Q9UHV5 662 aa7.11□□□□□ -1.27
CD44-239ENST00000639002 STXBP3O00186 592 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 SRGAP3O43295 1099 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 TRIM13O60858 407 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 TBC1D8O95759 1140 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 BMP7P18075 431 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 HOXA5P20719 270 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 TACR1P25103 407 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 NR1I3Q14994 352 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 TCERG1LQ5VWI1 586 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 OLFML2BQ68BL8 750 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 KIAA1211LQ6NV74 962 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 MARCH10Q8NA82 808 aaPredicted RBP7.1□□□□□ -1.27
CD44-239ENST00000639002 CPLX3Q8WVH0 158 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 GBP3Q9H0R5 595 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 APEX2Q9UBZ4 518 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 INPP5FQ9Y2H2 1132 aa7.1□□□□□ -1.27
CD44-239ENST00000639002 A0A1W2PQ27 194 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 A0A1W2PQ64 194 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 A0A1W2PQC6 194 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 A0A1W2PQD8 194 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 RFXAPO00287 272 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 PPM1BO75688 479 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 CYBBP04839 570 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 ATF4P18848 351 aaPredicted RBP7.09□□□□□ -1.27
CD44-239ENST00000639002 IGFBP6P24592 240 aaPredicted RBP7.09□□□□□ -1.27
CD44-239ENST00000639002 L1CAMP32004 1257 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 CORO7P57737 925 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 TMEM62Q0P6H9 643 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 VHLLQ6RSH7 139 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 PAQR3Q6TCH7 311 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 PARD6AQ9NPB6 346 aa7.09□□□□□ -1.27
CD44-239ENST00000639002 C2orf71A6NGG8 1288 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 BUB1BO60566 1050 aaPredicted RBP7.08□□□□□ -1.28
CD44-239ENST00000639002 AFF3P51826 1226 aaKnown RBP7.08□□□□□ -1.28
CD44-239ENST00000639002 ZNF200P98182 395 aaPredicted RBP7.08□□□□□ -1.28
CD44-239ENST00000639002 GRB10Q13322 594 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 VMACQ2NL98 169 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 EEF1DP3Q658K8 133 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 BICRALQ6AI39 1079 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 ZC3H14Q6PJT7 736 aaKnown RBP7.08□□□□□ -1.28
CD44-239ENST00000639002 ANAPC16Q96DE5 110 aa7.08□□□□□ -1.28
CD44-239ENST00000639002 ZC3H12DA2A288 527 aaKnown RBP7.07□□□□□ -1.28
CD44-239ENST00000639002 ANKRD34BA5PLL1 514 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 GLI4P10075 376 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 CYP4F3Q08477 520 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 CNKSR3Q6P9H4 555 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms