RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 COBLO75128 1261 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 ELNP15502 786 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 METAP2P50579 478 aaKnown RBP eCLIP23.56■■□□□ 1.36
PTCD3-220ENST00000627371 PPP2R5BQ15173 497 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 USH1GQ495M9 461 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 MUM1L1Q5H9M0 696 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 FBXO11Q86XK2 927 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 HOMER1Q86YM7 354 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 TRMT44Q8IYL2 757 aaKnown RBP23.56■■□□□ 1.36
PTCD3-220ENST00000627371 ANKRD35Q8N283 1001 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 NPLOC4Q8TAT6 608 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 TRIB2Q92519 343 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 PIGSQ96S52 555 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 ALDH8A1Q9H2A2 487 aaPredicted RBP23.56■■□□□ 1.36
PTCD3-220ENST00000627371 SLC5A4Q9NY91 659 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 ABCB11O95342 1321 aa23.56■■□□□ 1.36
PTCD3-220ENST00000627371 AMNQ9BXJ7 453 aa23.55■■□□□ 1.36
PTCD3-220ENST00000627371 A1CFQ9NQ94 594 aaKnown RBP23.55■■□□□ 1.36
PTCD3-220ENST00000627371 PFASO15067 1338 aa23.55■■□□□ 1.36
PTCD3-220ENST00000627371 MCM3APO60318 1980 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 DNAJC25-GNG10A0A024R161 153 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 HMGCRP04035 888 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 PGK2P07205 417 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 CCL14Q16627 93 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 CMTR1Q8N1G2 835 aaKnown RBP23.54■■□□□ 1.36
PTCD3-220ENST00000627371 CLEC4DQ8WXI8 215 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 DDX11Q96FC9 970 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 ZNF333Q96JL9 665 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 BACH2Q9BYV9 841 aa23.54■■□□□ 1.36
PTCD3-220ENST00000627371 FAM217BQ9NTX9 383 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-220ENST00000627371 DIS3Q9Y2L1 958 aaKnown RBP23.54■■□□□ 1.36
PTCD3-220ENST00000627371 BRCA2P51587 3418 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 PNMA6FA0A0J9YX94 578 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 CCDC196A0A1B0GTZ2 297 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 NFIBO00712 420 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 PPP1R11O60927 126 aaPredicted RBP23.53■■□□□ 1.36
PTCD3-220ENST00000627371 PDIA3P30101 505 aaKnown RBP23.53■■□□□ 1.36
PTCD3-220ENST00000627371 CDC27P30260 824 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 ZNF792Q3KQV3 632 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 RRP36Q96EU6 259 aaKnown RBP23.53■■□□□ 1.36
PTCD3-220ENST00000627371 KIF2CQ99661 725 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 CNTNAP5Q8WYK1 1306 aa23.53■■□□□ 1.36
PTCD3-220ENST00000627371 INHAP05111 366 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 NEK4P51957 841 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 UBXN2AP68543 259 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 TRAF1Q13077 416 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 ANKRD1Q15327 319 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 OLFML2BQ68BL8 750 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 ZNF274Q96GC6 653 aaPredicted RBP23.52■■□□□ 1.36
PTCD3-220ENST00000627371 MAML3Q96JK9 1138 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 CYP39A1Q9NYL5 469 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 FLRT1Q9NZU1 646 aa23.52■■□□□ 1.36
PTCD3-220ENST00000627371 BIN2Q9UBW5 565 aaPredicted RBP23.52■■□□□ 1.36
PTCD3-220ENST00000627371 SEC63Q9UGP8 760 aaKnown RBP23.52■■□□□ 1.36
PTCD3-220ENST00000627371 IGHA2P01877 340 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 AK2P54819 239 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 FUT2Q10981 343 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 NSMFQ6X4W1 530 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 CCDC82Q8N4S0 544 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 PIBF1Q8WXW3 757 aa23.51■■□□□ 1.35
PTCD3-220ENST00000627371 MRPL11Q9Y3B7 192 aaKnown RBP23.51■■□□□ 1.35
PTCD3-220ENST00000627371 ADD1P35611 737 aaKnown RBP23.5■■□□□ 1.35
PTCD3-220ENST00000627371 FAM133AQ8N9E0 248 aa23.5■■□□□ 1.35
PTCD3-220ENST00000627371 RGS22Q8NE09 1264 aa23.5■■□□□ 1.35
PTCD3-220ENST00000627371 LARP6Q9BRS8 491 aaKnown RBP23.5■■□□□ 1.35
PTCD3-220ENST00000627371 MAF1Q9H063 256 aa23.5■■□□□ 1.35
PTCD3-220ENST00000627371 PCDHA1Q9Y5I3 950 aa23.5■■□□□ 1.35
PTCD3-220ENST00000627371 POTEB2H3BUK9 544 aa23.49■■□□□ 1.35
PTCD3-220ENST00000627371 TRIM32Q13049 653 aa23.49■■□□□ 1.35
PTCD3-220ENST00000627371 RNF207Q6ZRF8 634 aa23.49■■□□□ 1.35
PTCD3-220ENST00000627371 TBC1D32Q96NH3 1257 aa23.49■■□□□ 1.35
PTCD3-220ENST00000627371 KIAA0100Q14667 2235 aaKnown RBP23.49■■□□□ 1.35
PTCD3-220ENST00000627371 PTPDC1A2A3K4 754 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 CCT2P78371 535 aaKnown RBP23.48■■□□□ 1.35
PTCD3-220ENST00000627371 BAATQ14032 418 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-220ENST00000627371 MAP3K21Q5TCX8 1036 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 MFSD14CQ5VZR4 134 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 SLC30A10Q6XR72 485 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 ZNF467Q7Z7K2 595 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-220ENST00000627371 MCF2L2Q86YR7 1114 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 FGD4Q96M96 766 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 TPCN1Q9ULQ1 816 aa23.48■■□□□ 1.35
PTCD3-220ENST00000627371 LRRC37A2A6NM11 1700 aa23.47■■□□□ 1.35
PTCD3-220ENST00000627371 RPS6P62753 249 aaKnown RBP23.47■■□□□ 1.35
PTCD3-220ENST00000627371 CNTN2Q02246 1040 aa23.47■■□□□ 1.35
PTCD3-220ENST00000627371 MTFR1Q15390 333 aa23.47■■□□□ 1.35
PTCD3-220ENST00000627371 MSL3Q8N5Y2 521 aaKnown RBP23.47■■□□□ 1.35
PTCD3-220ENST00000627371 NCOA5Q9HCD5 579 aaKnown RBP23.47■■□□□ 1.35
PTCD3-220ENST00000627371 FRMPD3Q5JV73 1810 aa23.47■■□□□ 1.35
PTCD3-220ENST00000627371 hCG_1642624A0A1W2PR95 340 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 OPLAHO14841 1288 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 PRKAR2AP13861 404 aaKnown RBP23.46■■□□□ 1.35
PTCD3-220ENST00000627371 CYP2C19P33261 490 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 GHRHRQ02643 423 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 CACNB2Q08289 660 aaPredicted RBP23.46■■□□□ 1.35
PTCD3-220ENST00000627371 NTRK3Q16288 839 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 MAMDC4Q6UXC1 1216 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 TINF2Q9BSI4 451 aa23.46■■□□□ 1.35
PTCD3-220ENST00000627371 RPTORQ8N122 1335 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 SYNGAP1Q96PV0 1343 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms