RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 A0A1W2PQ45 241 aaPredicted RBP22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 A0A1W2PQY0 241 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 SOWAHBA6NEL2 793 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 KDM4AO75164 1064 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 ACLYP53396 1101 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 GJA9P57773 515 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 MUM1L1Q5H9M0 696 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 KATNBL1Q9H079 304 aa22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 UPF3AQ9H1J1 476 aaKnown RBP22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 ADD3Q9UEY8 706 aaKnown RBP22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 NKX3-2P78367 333 aa22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 KCNA10Q16322 511 aa22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 CCSAPQ6IQ19 270 aaPredicted RBP22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 NSMFQ6X4W1 530 aa22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 LENG1Q96BZ8 264 aaPredicted RBP22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 TOX2Q96NM4 488 aa22.37■■□□□ 1.17
CCDC28A-203ENST00000617445 ELP1O95163 1332 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 WDR19Q8NEZ3 1342 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 TLE2Q04725 743 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 ZSCAN10Q96SZ4 725 aaPredicted RBP22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 ZKSCAN3Q9BRR0 538 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 MAF1Q9H063 256 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 KAT14Q9H8E8 782 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 STARD7Q9NQZ5 370 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 ZSWIM5Q9P217 1185 aa22.36■■□□□ 1.17
CCDC28A-203ENST00000617445 B4E1Z4 1266 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 SOX1O00570 391 aaPredicted RBP22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 C6orf222P0C671 652 aaPredicted RBP22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 GSPT1P15170 499 aaKnown RBP22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 TNFAIP2Q03169 654 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 IQSEC1Q6DN90 963 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 PNMA1Q8ND90 353 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 MORC4Q8TE76 937 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 GLT1D1Q96MS3 346 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 PRDM5Q9NQX1 630 aaPredicted RBP22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 PDLIM7Q9NR12 457 aa22.35■■□□□ 1.17
CCDC28A-203ENST00000617445 GNASQ5JWF2 1037 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 ANKRD33Q7Z3H0 272 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 LRCH3Q96II8 777 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 UBAC1Q9BSL1 405 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 VTA1Q9NP79 307 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 Q9Y3F1 56 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 LTBP2Q14767 1821 aa22.34■■□□□ 1.17
CCDC28A-203ENST00000617445 MROH7Q68CQ1 1323 aa22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 DCDC2CA8MYV0 355 aa22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 CLTBP09497 229 aa22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 BAATQ14032 418 aaPredicted RBP22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 ASPRV1Q53RT3 343 aa22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 ENAHQ8N8S7 591 aaPredicted RBP22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 MPHOSPH6Q99547 160 aaKnown RBP22.33■■□□□ 1.17
CCDC28A-203ENST00000617445 ADCY6O43306 1168 aa22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 CHMLP26374 656 aa22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 IRX6P78412 446 aaPredicted RBP22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 TRDNQ13061 729 aa22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 NOL8Q76FK4 1167 aaKnown RBP22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 RGS22Q8NE09 1264 aa22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 CLEC4DQ8WXI8 215 aa22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 GNEQ9Y223 722 aaKnown RBP22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 U3KPZ7 1027 aaPredicted RBP22.32■■□□□ 1.16
CCDC28A-203ENST00000617445 ASTN1O14525 1302 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 TNKSO95271 1327 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 PTPDC1A2A3K4 754 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 TRIM43BA6NCK2 446 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 B4DLN1 442 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 NFIBO00712 420 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 KIAA0355O15063 1070 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 ASGR1P07306 291 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 MRPL12P52815 198 aaKnown RBP22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 RNF207Q6ZRF8 634 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 TRIM43Q96BQ3 446 aaPredicted RBP22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 AP5M1Q9H0R1 490 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 LCTP09848 1927 aa22.31■■□□□ 1.16
CCDC28A-203ENST00000617445 MYADML2A6NDP7 307 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 ZEB2O60315 1214 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 PQBP1O60828 265 aaKnown RBP22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 CABYRO75952 493 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 ALDH5A1P51649 535 aaPredicted RBP22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 TAPT1Q6NXT6 567 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 SH3RF1Q7Z6J0 888 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 DNERQ8NFT8 737 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 BADQ92934 168 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 VTI1AQ96AJ9 217 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 SEZ6LQ9BYH1 1024 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 IL25Q9H293 177 aa22.3■■□□□ 1.16
CCDC28A-203ENST00000617445 A0A0U1RQG5 324 aaPredicted RBP22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 CTAGE5O15320 804 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 PARP1P09874 1014 aaKnown RBP22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 GOLGA8HP0CJ92 632 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 CDK7P50613 346 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 IFIT1BQ5T764 474 aaKnown RBP22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 TLK2Q86UE8 772 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 UBA5Q9GZZ9 404 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 TMEM39AQ9NV64 488 aa22.29■■□□□ 1.16
CCDC28A-203ENST00000617445 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 ARVCFO00192 962 aa22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 RAG1P15918 1043 aa22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 SMPD1P17405 629 aa22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 RPS6P62753 249 aaKnown RBP22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 FAAP100Q0VG06 881 aa22.28■■□□□ 1.16
CCDC28A-203ENST00000617445 FSCN1Q16658 493 aaKnown RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms