RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 RBM28Q9NW13 759 aaKnown RBP22.83■■□□□ 1.25
SHKBP1-214ENST00000597396 MCM3APO60318 1980 aa22.83■■□□□ 1.24
SHKBP1-214ENST00000597396 POTEFA5A3E0 1075 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 COBLO75128 1261 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 PLEKHA8P1O95397 391 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 HMGCRP04035 888 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 PGK2P07205 417 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 RCAN1P53805 252 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 CCL14Q16627 93 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 MUM1L1Q5H9M0 696 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 TRIB2Q92519 343 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 PIGSQ96S52 555 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 SPZ1Q9BXG8 430 aa22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 UPF2Q9HAU5 1272 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-214ENST00000597396 ZBTB5O15062 677 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 CYTH3O43739 400 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 MYCP01106 439 aaPredicted RBP22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 INHAP05111 366 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 SLC35G1Q2M3R5 365 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 NSMFQ6X4W1 530 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 PIBF1Q8WXW3 757 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 MTMR8Q96EF0 704 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 ZNF333Q96JL9 665 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 ABCB11O95342 1321 aa22.81■■□□□ 1.24
SHKBP1-214ENST00000597396 LCTP09848 1927 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 SMARCA1P28370 1054 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 METAP2P50579 478 aaKnown RBP eCLIP22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 TMTC3Q6ZXV5 915 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 CMTR1Q8N1G2 835 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 SRBD1Q8N5C6 995 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 RRP36Q96EU6 259 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 IL17RAQ96F46 866 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 AMNQ9BXJ7 453 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 C22orf23Q9BZE7 217 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 A1CFQ9NQ94 594 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 PFASO15067 1338 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 HTTP42858 3142 aa22.8■■□□□ 1.24
SHKBP1-214ENST00000597396 TRAF1Q13077 416 aa22.79■■□□□ 1.24
SHKBP1-214ENST00000597396 TOB2Q14106 344 aaPredicted RBP22.79■■□□□ 1.24
SHKBP1-214ENST00000597396 MFSD14CQ5VZR4 134 aa22.79■■□□□ 1.24
SHKBP1-214ENST00000597396 SEC63Q9UGP8 760 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-214ENST00000597396 KIAA0100Q14667 2235 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 PNMA6FA0A0J9YX94 578 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 POTEB2H3BUK9 544 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 NFIBO00712 420 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 PPP2R5BQ15173 497 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 ZNF792Q3KQV3 632 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 OLFML2BQ68BL8 750 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 CCDC82Q8N4S0 544 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 MAML3Q96JK9 1138 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 FLRT1Q9NZU1 646 aa22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 DIS3Q9Y2L1 958 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 MRPL11Q9Y3B7 192 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-214ENST00000597396 DNAJC25-GNG10A0A024R161 153 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 CCDC196A0A1B0GTZ2 297 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 PTPDC1A2A3K4 754 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 TRIM32Q13049 653 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 MTFR1Q15390 333 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 CLEC4DQ8WXI8 215 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 TMEM106CQ9BVX2 250 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 PCDHA1Q9Y5I3 950 aa22.77■■□□□ 1.24
SHKBP1-214ENST00000597396 PPP1R11O60927 126 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 CDC27P30260 824 aa22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 EVCP57679 992 aa22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 RNF207Q6ZRF8 634 aa22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 LARP6Q9BRS8 491 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 CYP39A1Q9NYL5 469 aa22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 NID2Q14112 1375 aa22.76■■□□□ 1.23
SHKBP1-214ENST00000597396 CCL5P13501 91 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 PRKAR2AP13861 404 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 PDIA3P30101 505 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 CYP2C19P33261 490 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 NEK4P51957 841 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 BAATQ14032 418 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 ANKRD1Q15327 319 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 RNF208Q9H0X6 261 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 ALDH8A1Q9H2A2 487 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 CNTNAP5Q8WYK1 1306 aa22.75■■□□□ 1.23
SHKBP1-214ENST00000597396 EN2P19622 333 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 CALML3P27482 149 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 ADD1P35611 737 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 RBM25P49756 843 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 AK2P54819 239 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 CCT2P78371 535 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 CNTN2Q02246 1040 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 CACNB2Q08289 660 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 MCF2L2Q86YR7 1114 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 FAM133AQ8N9E0 248 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 ZNF274Q96GC6 653 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 TINF2Q9BSI4 451 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 UNC93B1Q9H1C4 597 aa22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 HMX1Q9NP08 348 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 FAM217BQ9NTX9 383 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-214ENST00000597396 hCG_1642624A0A1W2PR95 340 aa22.73■■□□□ 1.23
SHKBP1-214ENST00000597396 SLC30A10Q6XR72 485 aa22.73■■□□□ 1.23
SHKBP1-214ENST00000597396 ZNF467Q7Z7K2 595 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-214ENST00000597396 RPTORQ8N122 1335 aa22.73■■□□□ 1.23
SHKBP1-214ENST00000597396 FRMPD3Q5JV73 1810 aa22.73■■□□□ 1.23
SHKBP1-214ENST00000597396 RPS6P62753 249 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 STK3Q13188 491 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms