RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ZNF654Q8IZM8 581 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 MTMR8Q96EF0 704 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 TMEM87BQ96K49 555 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 NEK1Q96PY6 1258 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 MTA3Q9BTC8 594 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 VAT1LQ9HCJ6 419 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 DDX20Q9UHI6 824 aaKnown RBP23.47■■□□□ 1.35
SS18-218ENST00000581021 POTEB2H3BUK9 544 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 PFASO15067 1338 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 CYTH3O43739 400 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 ZNF865P0CJ78 1059 aaPredicted RBP23.46■■□□□ 1.35
SS18-218ENST00000581021 CNGA1P29973 690 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 ANO1Q5XXA6 986 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 SLC30A10Q6XR72 485 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 ZNF467Q7Z7K2 595 aaPredicted RBP23.46■■□□□ 1.35
SS18-218ENST00000581021 SNX14Q9Y5W7 946 aa23.46■■□□□ 1.35
SS18-218ENST00000581021 MCM3APO60318 1980 aa23.45■■□□□ 1.35
SS18-218ENST00000581021 LRRC37A2A6NM11 1700 aa23.45■■□□□ 1.34
SS18-218ENST00000581021 SYNGAP1Q96PV0 1343 aa23.45■■□□□ 1.34
SS18-218ENST00000581021 CPA1P15085 419 aa23.45■■□□□ 1.34
SS18-218ENST00000581021 BAATQ14032 418 aaPredicted RBP23.45■■□□□ 1.34
SS18-218ENST00000581021 CATIPQ7Z7H3 387 aa23.45■■□□□ 1.34
SS18-218ENST00000581021 RAB11FIP4Q86YS3 637 aa23.45■■□□□ 1.34
SS18-218ENST00000581021 LENG1Q96BZ8 264 aaPredicted RBP23.45■■□□□ 1.34
SS18-218ENST00000581021 SEPT4O43236 478 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 DHX16O60231 1041 aaKnown RBP23.44■■□□□ 1.34
SS18-218ENST00000581021 DDAH1O94760 285 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 REC8O95072 547 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 RXRAP19793 462 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 LIFRP42702 1097 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 MSL3Q8N5Y2 521 aaKnown RBP23.44■■□□□ 1.34
SS18-218ENST00000581021 NUP133Q8WUM0 1156 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 PAWRQ96IZ0 340 aaKnown RBP23.44■■□□□ 1.34
SS18-218ENST00000581021 KATNBL1Q9H079 304 aa23.44■■□□□ 1.34
SS18-218ENST00000581021 ARMCX2Q7L311 632 aa23.43■■□□□ 1.34
SS18-218ENST00000581021 CCDC144CPQ8IYA2 1237 aa23.43■■□□□ 1.34
SS18-218ENST00000581021 RIOX1Q9H6W3 641 aa23.43■■□□□ 1.34
SS18-218ENST00000581021 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.43■■□□□ 1.34
SS18-218ENST00000581021 NRBP1Q9UHY1 535 aa23.43■■□□□ 1.34
SS18-218ENST00000581021 OPLAHO14841 1288 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 ADCY6O43306 1168 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 KRT32Q14532 448 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 NFXL1Q6ZNB6 911 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 DHX32Q7L7V1 743 aaKnown RBP23.42■■□□□ 1.34
SS18-218ENST00000581021 SGMS1Q86VZ5 419 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 ANKLE1Q8NAG6 615 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 TBC1D5Q92609 795 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 PIGSQ96S52 555 aa23.42■■□□□ 1.34
SS18-218ENST00000581021 BAZ2BQ9UIF8 2168 aaKnown RBP23.42■■□□□ 1.34
SS18-218ENST00000581021 PLEKHA8P1O95397 391 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 FBXO11Q86XK2 927 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 JAKMIP1Q96N16 626 aaKnown RBP23.41■■□□□ 1.34
SS18-218ENST00000581021 MAP3K14Q99558 947 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 USP26Q9BXU7 913 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 PNMA2Q9UL42 364 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 BRPF3Q9ULD4 1205 aa23.41■■□□□ 1.34
SS18-218ENST00000581021 ABCB11O95342 1321 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 PTPDC1A2A3K4 754 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 CCDC69A6NI79 296 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 ZBTB5O15062 677 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 MSCO60682 206 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 COL6A1P12109 1028 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 CALML3P27482 149 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 RPS6P62753 249 aaKnown RBP23.4■■□□□ 1.34
SS18-218ENST00000581021 RNF207Q6ZRF8 634 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 HOMER1Q86YM7 354 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 ZHX1Q9UKY1 873 aaPredicted RBP23.4■■□□□ 1.34
SS18-218ENST00000581021 CNPY2Q9Y2B0 182 aa23.4■■□□□ 1.34
SS18-218ENST00000581021 CAPN2P17655 700 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 ACVR2BQ13705 512 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 CMTR1Q8N1G2 835 aaKnown RBP23.39■■□□□ 1.33
SS18-218ENST00000581021 TMTC2Q8N394 836 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 COL20A1Q9P218 1284 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 MYH6P13533 1939 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 ALPK3Q96L96 1907 aa23.39■■□□□ 1.33
SS18-218ENST00000581021 APOA5Q6Q788 366 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 MICU3Q86XE3 530 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 SRBD1Q8N5C6 995 aaKnown RBP23.38■■□□□ 1.33
SS18-218ENST00000581021 CTCFLQ8NI51 663 aaPredicted RBP23.38■■□□□ 1.33
SS18-218ENST00000581021 MORC4Q8TE76 937 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 PIBF1Q8WXW3 757 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 AMNQ9BXJ7 453 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 SLC12A7Q9Y666 1083 aa23.38■■□□□ 1.33
SS18-218ENST00000581021 EPB41L2O43491 1005 aaKnown RBP23.37■■□□□ 1.33
SS18-218ENST00000581021 PTGS1P23219 599 aa23.37■■□□□ 1.33
SS18-218ENST00000581021 ALDH5A1P51649 535 aaPredicted RBP23.37■■□□□ 1.33
SS18-218ENST00000581021 NECAB2Q7Z6G3 386 aa23.37■■□□□ 1.33
SS18-218ENST00000581021 RGS22Q8NE09 1264 aa23.37■■□□□ 1.33
SS18-218ENST00000581021 SPZ1Q9BXG8 430 aa23.37■■□□□ 1.33
SS18-218ENST00000581021 ABHD16BQ9H3Z7 469 aa23.37■■□□□ 1.33
SS18-218ENST00000581021 AKR1A1P14550 325 aa23.36■■□□□ 1.33
SS18-218ENST00000581021 IRX5P78411 483 aaPredicted RBP23.36■■□□□ 1.33
SS18-218ENST00000581021 CCDC144BQ3MJ40 725 aa23.36■■□□□ 1.33
SS18-218ENST00000581021 GJC2Q5T442 439 aaPredicted RBP23.36■■□□□ 1.33
SS18-218ENST00000581021 FBXO16Q8IX29 292 aaPredicted RBP23.36■■□□□ 1.33
SS18-218ENST00000581021 SYTL5Q8TDW5 730 aaPredicted RBP23.36■■□□□ 1.33
SS18-218ENST00000581021 C11orf49Q9H6J7 331 aa23.36■■□□□ 1.33
SS18-218ENST00000581021 PCDHA1Q9Y5I3 950 aa23.36■■□□□ 1.33
SS18-218ENST00000581021 PNMA6FA0A0J9YX94 578 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms