RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 METAP2P50579 478 aaKnown RBP eCLIP9.31□□□□□ -0.92
COPS3-215ENST00000578317 PPATQ06203 517 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 FSTL1Q12841 308 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 VGLL4Q14135 290 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 NTRK3Q16288 839 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 RTN1Q16799 776 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 CST9Q5W186 159 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 ERO1BQ86YB8 467 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 NECAB1Q8N987 351 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 ZNF280CQ8ND82 737 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 ACER1Q8TDN7 264 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 LPAR1Q92633 364 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 LZTS2Q9BRK4 669 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 AS3MTQ9HBK9 375 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 AFG3L2Q9Y4W6 797 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 SNCAIPQ9Y6H5 919 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 ZHX2Q9Y6X8 837 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 PASKQ96RG2 1323 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 USP17L10C9JJH3 530 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 CXCL11O14625 94 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 PLA2G6O60733 806 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 CELF2O95319 508 aaKnown RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 IFNAR1P17181 557 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 JUNDP17535 347 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 CDC27P30260 824 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 USP14P54578 494 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 BACE1P56817 501 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 ST3GAL1Q11201 340 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 PRKG1Q13976 671 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 GRM4Q14833 912 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 GPATCH4Q5T3I0 446 aaKnown RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 CPLX2Q6PUV4 134 aaKnown RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 NOL8Q76FK4 1167 aaKnown RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 MICU3Q86XE3 530 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 CTCFLQ8NI51 663 aaPredicted RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 SMARCC2Q8TAQ2 1214 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 NUP133Q8WUM0 1156 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 DCAF4Q8WV16 495 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 VCPKMTQ9H867 229 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 GBA2Q9HCG7 927 aaPredicted RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 CWC22Q9HCG8 908 aaKnown RBP9.31□□□□□ -0.92
COPS3-215ENST00000578317 MAD2L2Q9UI95 211 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 FZD1Q9UP38 647 aa9.31□□□□□ -0.92
COPS3-215ENST00000578317 SIPA1L1O43166 1804 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 GOLGA8AA7E2F4 631 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 UBE2Q2LH0YL09 131 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 CDKL5O76039 1030 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 DXOO77932 396 aaKnown RBP9.3□□□□□ -0.92
COPS3-215ENST00000578317 NDUFB10O96000 172 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 PARP1P09874 1014 aaKnown RBP9.3□□□□□ -0.92
COPS3-215ENST00000578317 ECE1P42892 770 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 CCT2P78371 535 aaKnown RBP9.3□□□□□ -0.92
COPS3-215ENST00000578317 ATP2B2Q01814 1243 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 FMR1Q06787 632 aaKnown RBP eCLIP9.3□□□□□ -0.92
COPS3-215ENST00000578317 ZNF543Q08ER8 600 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 SPP2Q13103 211 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 STK3Q13188 491 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 ASPRV1Q53RT3 343 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 SLFN13Q68D06 897 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 CLEC10AQ8IUN9 316 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 CCDC83Q8IWF9 413 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 LRRC47Q8N1G4 583 aaKnown RBP9.3□□□□□ -0.92
COPS3-215ENST00000578317 RGS22Q8NE09 1264 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 SLC10A4Q96EP9 437 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 C12orf42Q96LP6 360 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 MYL10Q9BUA6 226 aa9.3□□□□□ -0.92
COPS3-215ENST00000578317 NAP1L2Q9ULW6 460 aaPredicted RBP9.3□□□□□ -0.92
COPS3-215ENST00000578317 LAMB1P07942 1786 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 CPLX1O14810 134 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 CTDNEP1O95476 244 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 F12P00748 615 aaPredicted RBP9.29□□□□□ -0.92
COPS3-215ENST00000578317 MMP16P51512 607 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 HMGN5P82970 282 aaKnown RBP9.29□□□□□ -0.92
COPS3-215ENST00000578317 PPIL2Q13356 520 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 PTPRNQ16849 979 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 USP17L2Q6R6M4 530 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 BTNL9Q6UXG8 535 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 TMTC3Q6ZXV5 915 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 MOB2Q70IA6 237 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 NSUN7Q8NE18 718 aaKnown RBP9.29□□□□□ -0.92
COPS3-215ENST00000578317 NCOA5Q9HCD5 579 aaKnown RBP9.29□□□□□ -0.92
COPS3-215ENST00000578317 KCNH4Q9UQ05 1017 aa9.29□□□□□ -0.92
COPS3-215ENST00000578317 CARNS1A5YM72 827 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 KLRF2D3W0D1 207 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 HSP90AA1P07900 732 aaKnown RBP9.28□□□□□ -0.92
COPS3-215ENST00000578317 BMP3P12645 472 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 RXRAP19793 462 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 SLC1A4P43007 532 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 NBPF11Q86T75 865 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 STAG2Q8N3U4 1231 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 SRBD1Q8N5C6 995 aaKnown RBP9.28□□□□□ -0.92
COPS3-215ENST00000578317 HHIPL1Q96JK4 782 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 CLMNQ96JQ2 1002 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 SPZ1Q9BXG8 430 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 RNF26Q9BY78 433 aaPredicted RBP9.28□□□□□ -0.92
COPS3-215ENST00000578317 RIOX1Q9H6W3 641 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 VRTNQ9H8Y1 702 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 ZNF408Q9H9D4 720 aa9.28□□□□□ -0.92
COPS3-215ENST00000578317 TMEM88BA6NKF7 163 aa9.27□□□□□ -0.92
COPS3-215ENST00000578317 WDR46O15213 610 aaKnown RBP9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms