RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 LRRCC1Q9C099 1032 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 KATNBL1Q9H079 304 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 RNF146Q9NTX7 359 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 YBX2Q9Y2T7 364 aaKnown RBP20.14■□□□□ 0.81
VPS29-204ENST00000548259 Q9Y3F1 56 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 BAZ2AQ9UIF9 1905 aaKnown RBP20.14■□□□□ 0.81
VPS29-204ENST00000548259 IGKV6D-41A0A0C4DH26 115 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 TMEM232C9JQI7 657 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 CHGBP05060 677 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 ZFYP08048 801 aaPredicted RBP20.13■□□□□ 0.81
VPS29-204ENST00000548259 TSPY3P0CV98 308 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 TSPY8P0CW00 308 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 ATP2A2P16615 1042 aaKnown RBP20.13■□□□□ 0.81
VPS29-204ENST00000548259 PDE4BQ07343 736 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 LRRC47Q8N1G4 583 aaKnown RBP20.13■□□□□ 0.81
VPS29-204ENST00000548259 APPBP2Q92624 585 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 NACAP1Q9BZK3 213 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 GNEQ9Y223 722 aaKnown RBP20.13■□□□□ 0.81
VPS29-204ENST00000548259 BDP1A6H8Y1 2624 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 NCOR1O75376 2440 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 CHD9Q3L8U1 2897 aa20.13■□□□□ 0.81
VPS29-204ENST00000548259 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.12■□□□□ 0.81
VPS29-204ENST00000548259 B4GALT4O60513 344 aa20.12■□□□□ 0.81
VPS29-204ENST00000548259 ACTN1P12814 892 aa20.12■□□□□ 0.81
VPS29-204ENST00000548259 SLC1A4P43007 532 aa20.12■□□□□ 0.81
VPS29-204ENST00000548259 TRPV6Q9H1D0 765 aa20.12■□□□□ 0.81
VPS29-204ENST00000548259 A1CFQ9NQ94 594 aaKnown RBP20.12■□□□□ 0.81
VPS29-204ENST00000548259 ZBTB40Q9NUA8 1239 aa20.12■□□□□ 0.81
VPS29-204ENST00000548259 RABGGTBP53611 331 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 TMEM67Q5HYA8 995 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 SIRT2Q8IXJ6 389 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 KBTBD3Q8NAB2 608 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 STAG1Q8WVM7 1258 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 TRERF1Q96PN7 1200 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 VTA1Q9NP79 307 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 ECHDC1Q9NTX5 307 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 POLR3EQ9NVU0 708 aa20.11■□□□□ 0.81
VPS29-204ENST00000548259 ASTN1O14525 1302 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 UMODL1Q5DID0 1318 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 PRDM1O75626 825 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 ALAS1P13196 640 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 SMPD1P17405 629 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 BRDTQ58F21 947 aaPredicted RBP20.1■□□□□ 0.81
VPS29-204ENST00000548259 NEDD1Q8NHV4 660 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 GMCL1Q96IK5 515 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 GPHNQ9NQX3 736 aaPredicted RBP20.1■□□□□ 0.81
VPS29-204ENST00000548259 RAPGEFL1Q9UHV5 662 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 MYO9BQ13459 2157 aa20.1■□□□□ 0.81
VPS29-204ENST00000548259 SOWAHBA6NEL2 793 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 ERC2O15083 957 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 RNF113AO15541 343 aaKnown RBP20.09■□□□□ 0.81
VPS29-204ENST00000548259 GPAA1O43292 621 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 BMP1P13497 986 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 KIAA1211Q6ZU35 1233 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 AGBL1Q96MI9 1066 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 WNT8AQ9H1J5 351 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 ALDH8A1Q9H2A2 487 aaPredicted RBP20.09■□□□□ 0.81
VPS29-204ENST00000548259 ADD3Q9UEY8 706 aaKnown RBP20.09■□□□□ 0.81
VPS29-204ENST00000548259 COG5Q9UP83 839 aa20.09■□□□□ 0.81
VPS29-204ENST00000548259 KIF28PB7ZC32 967 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 PATL2C9JE40 543 aaKnown RBP20.08■□□□□ 0.81
VPS29-204ENST00000548259 PLA2G6O60733 806 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 CPT1AP50416 773 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 EEPD1Q7L9B9 569 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 OSBP2Q969R2 916 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 HCN4Q9Y3Q4 1203 aa20.08■□□□□ 0.81
VPS29-204ENST00000548259 GRIN2DO15399 1336 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 RFC2P35250 354 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 PSMC6P62333 389 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 TFAP4Q01664 338 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 FBXO16Q8IX29 292 aaPredicted RBP20.07■□□□□ 0.8
VPS29-204ENST00000548259 SCLYQ96I15 445 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 SLC9A7Q96T83 725 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 MPHOSPH6Q99547 160 aaKnown RBP20.07■□□□□ 0.8
VPS29-204ENST00000548259 CYP39A1Q9NYL5 469 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 PLIN4Q96Q06 1357 aa20.07■□□□□ 0.8
VPS29-204ENST00000548259 RAD50Q92878 1312 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 LOC102724159A0A0B4J2E5 919 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 POU3F3P20264 500 aaPredicted RBP20.06■□□□□ 0.8
VPS29-204ENST00000548259 MCCP23508 829 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 PWP2Q15269 919 aaKnown RBP20.06■□□□□ 0.8
VPS29-204ENST00000548259 DUSP28Q4G0W2 176 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 TAPT1Q6NXT6 567 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 NSMFQ6X4W1 530 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 IFNL3Q8IZI9 196 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 RETREG2Q8NC44 543 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 PHOSPHO2Q8TCD6 241 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 NAPBQ9H115 298 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 CCPG1Q9ULG6 757 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 STX8Q9UNK0 236 aa20.06■□□□□ 0.8
VPS29-204ENST00000548259 ARIH1Q9Y4X5 557 aaPredicted RBP20.06■□□□□ 0.8
VPS29-204ENST00000548259 GREB1LQ9C091 1923 aaPredicted RBP20.06■□□□□ 0.8
VPS29-204ENST00000548259 ZNF536O15090 1300 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 TNKSO95271 1327 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 CA3P07451 260 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 MYOGP15173 224 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 TFF2Q03403 129 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 RCSD1Q6JBY9 416 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 DEFB128Q7Z7B8 93 aa20.05■□□□□ 0.8
VPS29-204ENST00000548259 NECAB3Q96P71 396 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms