RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TXLNAP40222 546 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 EIF4A1P60842 406 aaKnown RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 ATP2B2Q01814 1243 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 LONRF3Q496Y0 759 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF569Q5MCW4 686 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 TTC39AQ5SRH9 613 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 NYAP1Q6ZVC0 841 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 CYP2U1Q7Z449 544 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 IFT43Q96FT9 208 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 MYD88Q99836 296 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 FTOQ9C0B1 505 aaKnown RBP eCLIP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 PHACTR1Q9C0D0 580 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 MTMR6Q9Y217 621 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 SERTM1A2A2V5 107 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 SGSM2O43147 1006 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 ADH1CP00326 375 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 GYS1P13807 737 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 HNRNPH2P55795 449 aaKnown RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 WNT7BP56706 349 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 TTC31Q49AM3 519 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 CEP89Q96ST8 783 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 OSBPL7Q9BZF2 842 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 XPO4Q9C0E2 1151 aaKnown RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 EPC1Q9H2F5 836 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 PLEKHA4Q9H4M7 779 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 JADE2Q9NQC1 790 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 MAGEC2Q9UBF1 373 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 FOCADQ5VW36 1801 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 PRAMEF22A3QJZ6 481 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 HSPA4P34932 840 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC144BQ3MJ40 725 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 NBPF10Q6P3W6 841 aaKnown RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 FBXO38Q6PIJ6 1188 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CEP57Q86XR8 500 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 TREML1Q86YW5 311 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 NBPF15Q8N660 670 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 EPS8L3Q8TE67 593 aaKnown RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 SPTLC3Q9NUV7 552 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 KLF18A0A0U1RQI7 1052 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 SSBP05455 408 aaKnown RBP eCLIP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 MZF1P28698 734 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 SMC1AQ14683 1233 aaKnown RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC158Q5M9N0 1113 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 UBE3BQ7Z3V4 1068 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 LRRC8AQ8IWT6 810 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 TRIM22Q8IYM9 498 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 DESI2Q9BSY9 194 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 TMOD3Q9NYL9 352 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 STAP2Q9UGK3 403 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 FOXD3Q9UJU5 478 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CCNL1Q9UK58 526 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 PTPDC1A2A3K4 754 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 N4BP3O15049 544 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CAVIN2O95810 425 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 USP8P40818 1118 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 STAG2Q8N3U4 1231 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC148Q8NFR7 591 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 GBP3Q9H0R5 595 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 CLSTN2Q9H4D0 955 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 ZSCAN16Q9H4T2 348 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-203ENST00000547825 GUCA1BQ9UMX6 200 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 MRVI1Q9Y6F6 885 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 RAD50Q92878 1312 aa6.2□□□□□ -1.42
LIMA1-203ENST00000547825 GOLGA6L10A6NI86 522 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 SPTLC2O15270 562 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 WDHD1O75717 1129 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 IFIT1P09914 478 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CRKLP46109 303 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 KCNQ4P56696 695 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 TERF2Q15554 542 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 IMMTQ16891 758 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CCDC47Q96A33 483 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 XAGE2Q96GT9 111 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ZHX3Q9H4I2 956 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF395Q9H8N7 513 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 TPCN1Q9ULQ1 816 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CARMIL3Q8ND23 1372 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CDK5RAP2Q96SN8 1893 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 A0A0G2JLW4 131 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CTAGE15A4D2H0 777 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 POLRMTO00411 1230 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CAMTA2O94983 1202 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CTAGE8P0CG41 777 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CTAGE6Q86UF2 777 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 VPS37DQ86XT2 251 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CTAGE4Q8IX94 777 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 GOLGA1Q92805 767 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 KAZALD1Q96I82 304 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF496Q96IT1 587 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 MRGPRX2Q96LB1 330 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CSRNP1Q96S65 589 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 FHDC1Q9C0D6 1143 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 DACH1Q9UI36 760 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF609O15014 1411 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 SCN9AQ15858 1988 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 USP27XA6NNY8 438 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 ADKP55263 362 aaKnown RBP6.19□□□□□ -1.42
LIMA1-203ENST00000547825 CENPCQ03188 943 aa6.19□□□□□ -1.42
LIMA1-203ENST00000547825 SART3Q15020 963 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms