RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 ZFPM1Q8IX07 1006 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 C4orf32Q8N8J7 132 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 TRIML1Q8N9V2 468 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 TEKT1Q969V4 418 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 SPZ1Q9BXG8 430 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 MTMR4Q9NYA4 1195 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 SERPINB13Q9UIV8 391 aa13.01□□□□□ -0.33
USP35-207ENST00000530546 DDX60LQ5H9U9 1706 aaKnown RBP13□□□□□ -0.33
USP35-207ENST00000530546 CLGNO14967 610 aa13□□□□□ -0.33
USP35-207ENST00000530546 CUL4BQ13620 913 aa13□□□□□ -0.33
USP35-207ENST00000530546 LEKR1Q6ZMV7 388 aa13□□□□□ -0.33
USP35-207ENST00000530546 GPR161Q8N6U8 529 aaKnown RBP13□□□□□ -0.33
USP35-207ENST00000530546 SPATA20Q8TB22 786 aa13□□□□□ -0.33
USP35-207ENST00000530546 ENOX1Q8TC92 643 aaKnown RBP13□□□□□ -0.33
USP35-207ENST00000530546 COA7Q96BR5 231 aa13□□□□□ -0.33
USP35-207ENST00000530546 ZBTB9Q96C00 473 aa13□□□□□ -0.33
USP35-207ENST00000530546 BIN2Q9UBW5 565 aaPredicted RBP13□□□□□ -0.33
USP35-207ENST00000530546 M0R2N6 131 aa13□□□□□ -0.33
USP35-207ENST00000530546 RPS6KA5O75582 802 aa13□□□□□ -0.33
USP35-207ENST00000530546 TXLNAP40222 546 aa13□□□□□ -0.33
USP35-207ENST00000530546 STAT6P42226 847 aa13□□□□□ -0.33
USP35-207ENST00000530546 INTS13Q9NVM9 706 aa13□□□□□ -0.33
USP35-207ENST00000530546 TMEM260Q9NX78 707 aa13□□□□□ -0.33
USP35-207ENST00000530546 ADAM21Q9UKJ8 722 aa13□□□□□ -0.33
USP35-207ENST00000530546 ANKRD31Q8N7Z5 1873 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 SASH3O75995 380 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 PDHBP11177 359 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 CRKP46108 304 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 GYS2P54840 703 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 E2F4Q16254 413 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 MTRQ99707 1265 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 C6orf50Q9HD87 102 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 ARFGAP3Q9NP61 516 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 MAPK8IP1Q9UQF2 711 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 CCNT1O60563 726 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 GABPAQ06546 454 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 ZNF772Q68DY9 489 aaPredicted RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 APOBEC3HQ6NTF7 200 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 VSTM4Q8IW00 320 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 ZSCAN29Q8IWY8 852 aaPredicted RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 H0YIN7 160 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 SEC31AO94979 1220 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 LONP1P36776 959 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 RRAGBQ5VZM2 374 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 ARL6IP4Q66PJ3 421 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 PDXDC2PQ6P474 469 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 DAGLBQ8NCG7 672 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 FLAD1Q8NFF5 587 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 TMX1Q9H3N1 280 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 ZCCHC17Q9NP64 241 aaKnown RBP12.99□□□□□ -0.33
USP35-207ENST00000530546 CTNND2Q9UQB3 1225 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 SUGT1Q9Y2Z0 365 aa12.99□□□□□ -0.33
USP35-207ENST00000530546 MYH1P12882 1939 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 SYNRGQ9UMZ2 1314 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 LOC102724159A0A0B4J2E5 919 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 HLA-DOAP06340 250 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 SLC16A2P36021 539 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 UBA7P41226 1012 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 LMAN1P49257 510 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 NONOQ15233 471 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP35-207ENST00000530546 PWP2Q15269 919 aaKnown RBP12.98□□□□□ -0.33
USP35-207ENST00000530546 CCDC96Q2M329 555 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 TTBK2Q6IQ55 1244 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 GALNT17Q6IS24 598 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 CCDC12Q8WUD4 166 aaPredicted RBP12.98□□□□□ -0.33
USP35-207ENST00000530546 GSDMAQ96QA5 445 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 ZMYND12Q9H0C1 365 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 RNF216Q9NWF9 866 aaPredicted RBP12.98□□□□□ -0.33
USP35-207ENST00000530546 CDK5RAP2Q96SN8 1893 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 ZNF18P17022 549 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 SHMT1P34896 483 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 SHROOM1Q2M3G4 852 aaPredicted RBP12.98□□□□□ -0.33
USP35-207ENST00000530546 PPM1EQ8WY54 764 aa12.98□□□□□ -0.33
USP35-207ENST00000530546 HMGB2P26583 209 aaKnown RBP12.97□□□□□ -0.33
USP35-207ENST00000530546 ERCC5P28715 1186 aaPredicted RBP12.97□□□□□ -0.33
USP35-207ENST00000530546 GNA11P29992 359 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 DEF6Q9H4E7 631 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 PPP1R3GB7ZBB8 358 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 GTPBP6O43824 516 aaPredicted RBP12.97□□□□□ -0.33
USP35-207ENST00000530546 ECE2O60344 883 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 TTLL1O95922 423 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 KCTD1Q719H9 257 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 KRT25Q7Z3Z0 450 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 TBCKQ8TEA7 893 aa12.97□□□□□ -0.33
USP35-207ENST00000530546 AOC3Q16853 763 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 SPATA1Q5VX52 437 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 HHIPL2Q6UWX4 724 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 PODNQ7Z5L7 613 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 REXO1Q8N1G1 1221 aaKnown RBP12.96□□□□□ -0.33
USP35-207ENST00000530546 FUT8Q9BYC5 575 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 DISC1Q9NRI5 854 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 GDAQ9Y2T3 454 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 LTBP1Q14766 1721 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 RXRBP28702 533 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 ADKP55263 362 aaKnown RBP12.96□□□□□ -0.33
USP35-207ENST00000530546 NEK8Q86SG6 692 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 SUGP1Q8IWZ8 645 aaKnown RBP12.96□□□□□ -0.33
USP35-207ENST00000530546 MSL3Q8N5Y2 521 aaKnown RBP12.96□□□□□ -0.33
USP35-207ENST00000530546 LRRC37AA6NMS7 1700 aa12.96□□□□□ -0.33
USP35-207ENST00000530546 TEX33O43247 280 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms