RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 AXDND1Q5T1B0 1012 aaPredicted RBP23.98■■□□□ 1.43
VPS28-208ENST00000527797 MCTP2Q6DN12 878 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 CNKSR2Q8WXI2 1034 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 CTDP1Q9Y5B0 961 aaPredicted RBP23.98■■□□□ 1.43
VPS28-208ENST00000527797 ABCB11O95342 1321 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 ZBED4O75132 1171 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 ICAM1P05362 532 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 LDLRAD1Q5T700 205 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 NEK8Q86SG6 692 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 TEX2Q8IWB9 1127 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 TBCKQ8TEA7 893 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 MRPS27Q92552 414 aaKnown RBP23.97■■□□□ 1.43
VPS28-208ENST00000527797 OTUD5Q96G74 571 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 MRPL11Q9Y3B7 192 aaKnown RBP23.97■■□□□ 1.43
VPS28-208ENST00000527797 PAPPA2Q9BXP8 1791 aa23.97■■□□□ 1.43
VPS28-208ENST00000527797 UNCXA6NJT0 531 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 PTPREP23469 700 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 MCM7P33993 719 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 CATSPERGQ6ZRH7 1159 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 CCDC73Q6ZRK6 1079 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 FSIP1Q8NA03 581 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 ZNF526Q8TF50 670 aaPredicted RBP23.96■■□□□ 1.43
VPS28-208ENST00000527797 SLC38A10Q9HBR0 1119 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 PNMA2Q9UL42 364 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 PHIPQ8WWQ0 1821 aa23.96■■□□□ 1.43
VPS28-208ENST00000527797 USP17L15C9J2P7 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L13C9JLJ4 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L11C9JVI0 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L18D6R9N7 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L22D6RA61 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L17D6RBQ6 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L19D6RCP7 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L20D6RJB6 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 CXCL11O14625 94 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 CMA1P23946 247 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L24Q0WX57 530 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 USP17L6PQ6QN14 398 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 FBXO2Q9UK22 296 aaPredicted RBP23.95■■□□□ 1.43
VPS28-208ENST00000527797 CCPG1Q9ULG6 757 aa23.95■■□□□ 1.43
VPS28-208ENST00000527797 SRPRBQ9Y5M8 271 aaKnown RBP23.95■■□□□ 1.43
VPS28-208ENST00000527797 MEIS2O14770 477 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 IRF6O14896 467 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 TAL1P17542 331 aaPredicted RBP23.95■■□□□ 1.42
VPS28-208ENST00000527797 ATP2C1P98194 919 aaPredicted RBP23.95■■□□□ 1.42
VPS28-208ENST00000527797 FMR1Q06787 632 aaKnown RBP eCLIP23.95■■□□□ 1.42
VPS28-208ENST00000527797 PTGDRQ13258 359 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 PPIL2Q13356 520 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 AP3B2Q13367 1082 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 COG2Q14746 738 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 CCDC183Q5T5S1 534 aa23.95■■□□□ 1.42
VPS28-208ENST00000527797 ZNF536O15090 1300 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 DSG3P32926 999 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 FKBP1BP68106 108 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 LETM2Q2VYF4 491 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 ZSCAN23Q3MJ62 389 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 FERMT2Q96AC1 680 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 AGBL1Q96MI9 1066 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 CLIC6Q96NY7 704 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 GOLPH3LQ9H4A5 285 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 DDX19AQ9NUU7 478 aaKnown RBP23.94■■□□□ 1.42
VPS28-208ENST00000527797 DACT1Q9NYF0 836 aa23.94■■□□□ 1.42
VPS28-208ENST00000527797 OTOFQ9HC10 1997 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 VWA5AO00534 786 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 OPLAHO14841 1288 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 FOSP01100 380 aaPredicted RBP23.93■■□□□ 1.42
VPS28-208ENST00000527797 CPXCR1Q8N123 301 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 ZNF579Q8NAF0 562 aaKnown RBP23.93■■□□□ 1.42
VPS28-208ENST00000527797 OPTNQ96CV9 577 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 ATG4CQ96DT6 458 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 SLC10A4Q96EP9 437 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 KCNH4Q9UQ05 1017 aa23.93■■□□□ 1.42
VPS28-208ENST00000527797 A0A0G2JLL6 359 aaPredicted RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 PIK3CDO00329 1044 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 CCNT1O60563 726 aaKnown RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 NR1I2O75469 434 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 FAM160A1Q05DH4 1040 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 ORC2Q13416 577 aaPredicted RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 PRRT2Q7Z6L0 340 aaPredicted RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 PROCA1Q8NCQ7 364 aaPredicted RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 RAVER2Q9HCJ3 691 aaKnown RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 HOXC10Q9NYD6 342 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 MRVI1Q9Y6F6 885 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 MYPNQ86TC9 1320 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 A0A1B0GVL5 298 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 GSE1Q14687 1217 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 ARL6IP4Q66PJ3 421 aaKnown RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 SHC4Q6S5L8 630 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 ANO3Q9BYT9 981 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 GBA2Q9HCG7 927 aaPredicted RBP23.92■■□□□ 1.42
VPS28-208ENST00000527797 ADAMTS5Q9UNA0 930 aa23.92■■□□□ 1.42
VPS28-208ENST00000527797 SPDYE3A6NKU9 549 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 GCOM1H8Y6P7 765 aaPredicted RBP23.91■■□□□ 1.42
VPS28-208ENST00000527797 LAD1O00515 517 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 LETM1O95202 739 aaPredicted RBP23.91■■□□□ 1.42
VPS28-208ENST00000527797 POLR2MP0CAP2 368 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 RESP18Q5W5W9 173 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 GADL1Q6ZQY3 521 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 C4orf32Q8N8J7 132 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 C2orf69Q8N8R5 385 aa23.91■■□□□ 1.42
VPS28-208ENST00000527797 ENGASEQ8NFI3 743 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms