RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CCDC144BQ3MJ40 725 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 GPATCH4Q5T3I0 446 aaKnown RBP10.95□□□□□ -0.66
HDAC3-215ENST00000519474 CCSAPQ6IQ19 270 aaPredicted RBP10.95□□□□□ -0.66
HDAC3-215ENST00000519474 STOX1Q6ZVD7 989 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 CENPQQ7L2Z9 268 aaPredicted RBP10.95□□□□□ -0.66
HDAC3-215ENST00000519474 ARMCX2Q7L311 632 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 ADGRF4Q8IZF3 695 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 STAG2Q8N3U4 1231 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 TBC1D5Q92609 795 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 FERMT2Q96AC1 680 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 KAT14Q9H8E8 782 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 XPNPEP3Q9NQH7 507 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 PCDH10Q9P2E7 1040 aa10.95□□□□□ -0.66
HDAC3-215ENST00000519474 DDX49Q9Y6V7 483 aaKnown RBP10.95□□□□□ -0.66
HDAC3-215ENST00000519474 ALPK3Q96L96 1907 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 PLXNA1Q9UIW2 1896 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 TNKSO95271 1327 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 ASB14A6NK59 587 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 KBTBD13C9JR72 458 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 NFIBO00712 420 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 ADCY6O43306 1168 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 ADAMTS4O75173 837 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 DUSP11O75319 330 aaKnown RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 MYCNP04198 464 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 BMP8BP34820 402 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 FXR1P51114 621 aaKnown RBP eCLIP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 TMEM132AQ24JP5 1023 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 TAPT1Q6NXT6 567 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 NSMFQ6X4W1 530 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 IGDCC4Q8TDY8 1250 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 MORC4Q8TE76 937 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 LENG1Q96BZ8 264 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 LSG1Q9H089 658 aaKnown RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 SENP2Q9HC62 589 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 VAT1LQ9HCJ6 419 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 PDGFCQ9NRA1 345 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 ZHX1Q9UKY1 873 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 PHF24Q9UPV7 400 aa10.94□□□□□ -0.66
HDAC3-215ENST00000519474 RBM8AQ9Y5S9 174 aaKnown RBP10.94□□□□□ -0.66
HDAC3-215ENST00000519474 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-215ENST00000519474 PALM3A6NDB9 673 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-215ENST00000519474 CTAGE5O15320 804 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 RTP1P59025 263 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 TRDNQ13061 729 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 COL9A3Q14050 684 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-215ENST00000519474 NECTIN1Q15223 517 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 KCNA10Q16322 511 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 TMEM63BQ5T3F8 832 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 IFIT1BQ5T764 474 aaKnown RBP10.93□□□□□ -0.66
HDAC3-215ENST00000519474 C1orf53Q5VUE5 145 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 IQSEC1Q6DN90 963 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 CHST3Q7LGC8 479 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 RNF180Q86T96 592 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 RGS22Q8NE09 1264 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 NCOA7Q8NI08 942 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 ESYT1Q9BSJ8 1104 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 UBAC1Q9BSL1 405 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 TSEN34Q9BSV6 310 aaKnown RBP10.93□□□□□ -0.66
HDAC3-215ENST00000519474 JMJD4Q9H9V9 463 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 PNMA2Q9UL42 364 aa10.93□□□□□ -0.66
HDAC3-215ENST00000519474 WDR19Q8NEZ3 1342 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 MYADML2A6NDP7 307 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 IFIT3O14879 490 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 HMGB1P09429 215 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 PARP1P09874 1014 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 MAGEA10P43363 369 aaPredicted RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 GJA9P57773 515 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 ANTXR2P58335 489 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 RPS6P62753 249 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 NKX3-2P78367 333 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 TNFAIP2Q03169 654 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 SNX17Q15036 470 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 SLC35G1Q2M3R5 365 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 ASPRV1Q53RT3 343 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 BMP2KLQ5H9B9 411 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 KIAA1211Q6ZU35 1233 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 MTMR8Q96EF0 704 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 UPF3AQ9H1J1 476 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 MAD2L2Q9UI95 211 aa10.92□□□□□ -0.66
HDAC3-215ENST00000519474 GNEQ9Y223 722 aaKnown RBP10.92□□□□□ -0.66
HDAC3-215ENST00000519474 PTPDC1A2A3K4 754 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 KLRF2D3W0D1 207 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 SLC27A2O14975 620 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 SMPD1P17405 629 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 CDK11BP21127 795 aaKnown RBP10.91□□□□□ -0.66
HDAC3-215ENST00000519474 PTGS1P23219 599 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 CALML3P27482 149 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 ACLYP53396 1101 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 TROAPQ12815 778 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 CDC37Q16543 378 aaPredicted RBP10.91□□□□□ -0.66
HDAC3-215ENST00000519474 QRICH1Q2TAL8 776 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 USH1GQ495M9 461 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 RNF207Q6ZRF8 634 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 EEPD1Q7L9B9 569 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 SH3RF1Q7Z6J0 888 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 MB21D2Q8IYB1 491 aaPredicted RBP10.91□□□□□ -0.66
HDAC3-215ENST00000519474 RIOX1Q9H6W3 641 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 GPHNQ9NQX3 736 aaPredicted RBP10.91□□□□□ -0.66
HDAC3-215ENST00000519474 ATP11BQ9Y2G3 1177 aa10.91□□□□□ -0.66
HDAC3-215ENST00000519474 SYNRGQ9UMZ2 1314 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms