RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 UBOX5O94941 541 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 TPP2P29144 1249 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 IARSP41252 1262 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 GFPT1Q06210 699 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 CKAP4Q07065 602 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 KRT71Q3SY84 523 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 CCDC178Q5BJE1 867 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 MSL3Q8N5Y2 521 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 KLHL23Q8NBE8 558 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 RETREG2Q8NC44 543 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 SYMPKQ92797 1274 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 ACSBG1Q96GR2 724 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 CCDC42Q96M95 316 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 DDX23Q9BUQ8 820 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 NAA15Q9BXJ9 866 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 PUS7LQ9H0K6 701 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 HAUS4Q9H6D7 363 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 AATFQ9NY61 560 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 SNX12Q9UMY4 172 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC4A4Q9Y6R1 1079 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 MAST3O60307 1309 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 MYH13Q9UKX3 1938 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 GCOM1H8Y6P7 765 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 SMIM22K7EJ46 135 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 EPHB6O15197 1021 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 ACTN4O43707 911 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 CAPN15O75808 1086 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 RTN3O95197 1032 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 MYZAPP0CAP1 466 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 NEFHP12036 1026 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 LRRC34Q8IZ02 419 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 CCT6BQ92526 530 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 UIMC1Q96RL1 719 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 YIPF2Q9BWQ6 316 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 TRIM4Q9C037 500 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 ALDH8A1Q9H2A2 487 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 PAG1Q9NWQ8 432 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 MTMR7Q9Y216 660 aa8.02□□□□□ -1.13
LIMCH1-207ENST00000508466 TARSL2A2RTX5 802 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 RAD51CO43502 376 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 AKR1B10O60218 316 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 HSD17B3P37058 310 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PAFAH1B1P43034 410 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 AKNAD1Q5T1N1 836 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SOGA3Q5TF21 947 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 RCSD1Q6JBY9 416 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TMEM154Q6P9G4 183 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PALB2Q86YC2 1186 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SNRNP27Q8WVK2 155 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CELF4Q9BZC1 486 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC5A4Q9NY91 659 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ZFATQ9P243 1243 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SMAPO00193 183 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PPIP5K2O43314 1243 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TRAPPC3O43617 180 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 RNF8O76064 485 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SARSP49591 514 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ZBED6P86452 979 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PAK2Q13177 524 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ZC2HC1CQ53FD0 456 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TCP11X2Q5H9J9 407 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 C1QTNF12Q5T7M4 302 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ALS2CLQ60I27 953 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 NUGGCQ68CJ6 796 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CNBD1Q8NA66 436 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 HOOK2Q96ED9 719 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PRMT1Q99873 361 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 IFIH1Q9BYX4 1025 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ADAM33Q9BZ11 813 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PHACTR1Q9C0D0 580 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 FBXO2Q9UK22 296 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 FBXL5Q9UKA1 691 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ZNF330Q9Y3S2 320 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 USP42Q9H9J4 1324 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CCT8L1PA6NM43 557 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PP2D1A8MPX8 630 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 RAPGEF3O95398 923 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TUBBP07437 444 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PARP1P09874 1014 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 PRCPP42785 496 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 IFI35P80217 286 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CTDSPL2Q05D32 466 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 IFFO1Q0D2I5 559 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 SAFBQ15424 915 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TCERG1LQ5VWI1 586 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CWF19L1Q69YN2 538 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CCNJLQ8IV13 435 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ELOA2Q8IYF1 753 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 MAB21L3Q8N8X9 362 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 CCDC47Q96A33 483 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 MTMR8Q96EF0 704 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 DDX47Q9H0S4 455 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 MMRN2Q9H8L6 949 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ECT2Q9H8V3 914 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ZNHIT6Q9NWK9 470 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 NOP53Q9NZM5 478 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 DACH1Q9UI36 760 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 ATP8A1Q9Y2Q0 1164 aa8.01□□□□□ -1.13
LIMCH1-207ENST00000508466 TMCO5BA8MYB1 307 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 ATP6V1G1O75348 118 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms