RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.43■■□□□ 1.98
COL27A1-208ENST00000494780 ICAM1P05362 532 aa27.43■■□□□ 1.98
COL27A1-208ENST00000494780 MUM1L1Q5H9M0 696 aa27.43■■□□□ 1.98
COL27A1-208ENST00000494780 MFSD5Q6N075 450 aa27.43■■□□□ 1.98
COL27A1-208ENST00000494780 NOL8Q76FK4 1167 aaKnown RBP27.43■■□□□ 1.98
COL27A1-208ENST00000494780 RANBP17Q9H2T7 1088 aaKnown RBP27.43■■□□□ 1.98
COL27A1-208ENST00000494780 TCP11L1Q9NUJ3 509 aa27.43■■□□□ 1.98
COL27A1-208ENST00000494780 GNEQ9Y223 722 aaKnown RBP27.43■■□□□ 1.98
COL27A1-208ENST00000494780 TMEM265A0A087WTH1 108 aa27.42■■□□□ 1.98
COL27A1-208ENST00000494780 TOP1P11387 765 aaKnown RBP27.42■■□□□ 1.98
COL27A1-208ENST00000494780 BTNL9Q6UXG8 535 aa27.42■■□□□ 1.98
COL27A1-208ENST00000494780 TTYH1Q9H313 450 aaPredicted RBP27.42■■□□□ 1.98
COL27A1-208ENST00000494780 ASTN1O14525 1302 aa27.41■■□□□ 1.98
COL27A1-208ENST00000494780 TLR3O15455 904 aaKnown RBP27.41■■□□□ 1.98
COL27A1-208ENST00000494780 HSPD1P10809 573 aaKnown RBP27.41■■□□□ 1.98
COL27A1-208ENST00000494780 BEX3Q00994 111 aa27.41■■□□□ 1.98
COL27A1-208ENST00000494780 RRP12Q5JTH9 1297 aaKnown RBP27.41■■□□□ 1.98
COL27A1-208ENST00000494780 TMEM47Q9BQJ4 181 aa27.41■■□□□ 1.98
COL27A1-208ENST00000494780 CABYRO75952 493 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 NMIQ13287 307 aaPredicted RBP27.4■■□□□ 1.98
COL27A1-208ENST00000494780 PPIGQ13427 754 aaKnown RBP eCLIP27.4■■□□□ 1.983e-25■■■■□ 24.7
COL27A1-208ENST00000494780 AAMPQ13685 434 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 IQSEC1Q6DN90 963 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 TTBK2Q6IQ55 1244 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 NSMFQ6X4W1 530 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 TLK2Q86UE8 772 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 FAM126BQ8IXS8 530 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 AP5M1Q9H0R1 490 aa27.4■■□□□ 1.98
COL27A1-208ENST00000494780 LRRC37A2A6NM11 1700 aa27.39■■□□□ 1.98
COL27A1-208ENST00000494780 HSFX4A0A1B0GTS1 333 aaPredicted RBP27.39■■□□□ 1.98
COL27A1-208ENST00000494780 HSFX3A0A1B0GWH4 333 aaPredicted RBP27.39■■□□□ 1.98
COL27A1-208ENST00000494780 SYDE2Q5VT97 1194 aa27.39■■□□□ 1.98
COL27A1-208ENST00000494780 ZNF589Q86UQ0 364 aaPredicted RBP27.39■■□□□ 1.98
COL27A1-208ENST00000494780 PHF6Q8IWS0 365 aaKnown RBP eCLIP27.39■■□□□ 1.98
COL27A1-208ENST00000494780 MORC4Q8TE76 937 aa27.39■■□□□ 1.98
COL27A1-208ENST00000494780 Q9Y3F1 56 aa27.39■■□□□ 1.98
COL27A1-208ENST00000494780 CCDC171Q6TFL3 1326 aa27.39■■□□□ 1.97
COL27A1-208ENST00000494780 CUL9Q8IWT3 2517 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 TRIM6-TRIM34B2RNG4 842 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 PCP11498 1178 aaKnown RBP27.38■■□□□ 1.97
COL27A1-208ENST00000494780 SMPD1P17405 629 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 SLC16A2P36021 539 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 FSCN1Q16658 493 aaKnown RBP27.38■■□□□ 1.97
COL27A1-208ENST00000494780 TAPT1Q6NXT6 567 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 CXCL17Q6UXB2 119 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 TMEM199Q8N511 208 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 SLC43A3Q8NBI5 491 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.38■■□□□ 1.971e-25■□□□□ 11.2
COL27A1-208ENST00000494780 LNPKQ9C0E8 428 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 VTA1Q9NP79 307 aa27.38■■□□□ 1.97
COL27A1-208ENST00000494780 ZEB2O60315 1214 aa27.37■■□□□ 1.97
COL27A1-208ENST00000494780 FBXO16Q8IX29 292 aaPredicted RBP27.37■■□□□ 1.97
COL27A1-208ENST00000494780 TTC14Q96N46 770 aa27.37■■□□□ 1.97
COL27A1-208ENST00000494780 SEZ6LQ9BYH1 1024 aa27.37■■□□□ 1.97
COL27A1-208ENST00000494780 PDGFCQ9NRA1 345 aa27.37■■□□□ 1.97
COL27A1-208ENST00000494780 ADD3Q9UEY8 706 aaKnown RBP27.37■■□□□ 1.97
COL27A1-208ENST00000494780 PNMA2Q9UL42 364 aa27.37■■□□□ 1.97
COL27A1-208ENST00000494780 DDX49Q9Y6V7 483 aaKnown RBP27.37■■□□□ 1.97
COL27A1-208ENST00000494780 LAMA2P24043 3122 aaKnown RBP27.37■■□□□ 1.97
COL27A1-208ENST00000494780 LOC102724159A0A0B4J2E5 919 aa27.36■■□□□ 1.97
COL27A1-208ENST00000494780 DYNC1LI2O43237 492 aaPredicted RBP27.36■■□□□ 1.97
COL27A1-208ENST00000494780 CD4P01730 458 aa27.36■■□□□ 1.97
COL27A1-208ENST00000494780 PWP2Q15269 919 aaKnown RBP27.36■■□□□ 1.97
COL27A1-208ENST00000494780 EEPD1Q7L9B9 569 aa27.36■■□□□ 1.97
COL27A1-208ENST00000494780 MYLIPQ8WY64 445 aa27.36■■□□□ 1.97
COL27A1-208ENST00000494780 GPCPD1Q9NPB8 672 aa27.36■■□□□ 1.97
COL27A1-208ENST00000494780 FRMPD2Q68DX3 1309 aaPredicted RBP27.36■■□□□ 1.97
COL27A1-208ENST00000494780 PDHBP11177 359 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 MFAP1P55081 439 aaKnown RBP27.35■■□□□ 1.97
COL27A1-208ENST00000494780 HAND2P61296 217 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 BAATQ14032 418 aaPredicted RBP27.35■■□□□ 1.97
COL27A1-208ENST00000494780 AKNAD1Q5T1N1 836 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 MFSD6Q6ZSS7 791 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 C16orf59Q7L2K0 433 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 SMC5Q8IY18 1101 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 MAFAQ8NHW3 353 aaPredicted RBP27.35■■□□□ 1.97
COL27A1-208ENST00000494780 RILPL2Q969X0 211 aa27.35■■□□□ 1.97
COL27A1-208ENST00000494780 PURBQ96QR8 312 aaKnown RBP27.35■■□□□ 1.97
COL27A1-208ENST00000494780 LCTP09848 1927 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 CSF2RAP15509 400 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 ITGA7Q13683 1181 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 TMEM240Q5SV17 173 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 KIAA1211Q6ZU35 1233 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 PPP1R12CQ9BZL4 782 aa27.34■■□□□ 1.97
COL27A1-208ENST00000494780 RWDD1Q9H446 243 aaPredicted RBP27.34■■□□□ 1.97
COL27A1-208ENST00000494780 RNF41Q9H4P4 317 aaPredicted RBP27.34■■□□□ 1.97
COL27A1-208ENST00000494780 NFIBO00712 420 aa27.33■■□□□ 1.97
COL27A1-208ENST00000494780 DNAJB2P25686 324 aa27.33■■□□□ 1.97
COL27A1-208ENST00000494780 ALDH5A1P51649 535 aaPredicted RBP27.33■■□□□ 1.97
COL27A1-208ENST00000494780 PSRC1Q6PGN9 363 aaPredicted RBP27.33■■□□□ 1.97
COL27A1-208ENST00000494780 PTPDC1A2A3K4 754 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 SNHG28P0DPA3 235 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 FOSL2P15408 326 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 SDSP20132 328 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 PTGS1P23219 599 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 ZNF543Q08ER8 600 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 DUSP28Q4G0W2 176 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 RASIP1Q5U651 963 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 TBC1D10CQ8IV04 446 aa27.32■■□□□ 1.96
COL27A1-208ENST00000494780 A0A0C4DFX4 3053 aa27.32■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms