RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 TDO2P48775 406 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 APPBP2Q92624 585 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 AGBL1Q96MI9 1066 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 NOC4LQ9BVI4 516 aaKnown RBP16.64■□□□□ 0.25
VARS-227ENST00000489979 LRRCC1Q9C099 1032 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 AP5M1Q9H0R1 490 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 ZNF287Q9HBT7 754 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 RNF146Q9NTX7 359 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 DDX49Q9Y6V7 483 aaKnown RBP16.64■□□□□ 0.25
VARS-227ENST00000489979 LRRC37A2A6NM11 1700 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 ZNF536O15090 1300 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 BDP1A6H8Y1 2624 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 REV3LO60673 3130 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 GPAA1O43292 621 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 ZEB2O60315 1214 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 B4GALT4O60513 344 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 APPP05067 770 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 FDX1P10109 184 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 MYOGP15173 224 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 MICALL1Q8N3F8 863 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 KBTBD3Q8NAB2 608 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 CHMP4CQ96CF2 233 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 WNT8AQ9H1J5 351 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 PDGFCQ9NRA1 345 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 ECHDC1Q9NTX5 307 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 SLC4A7Q9Y6M7 1214 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 XIRP2A4UGR9 3374 aa16.63■□□□□ 0.25
VARS-227ENST00000489979 M0R2C6 588 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 RNF113AO15541 343 aaKnown RBP16.62■□□□□ 0.25
VARS-227ENST00000489979 TSPY3P0CV98 308 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 TSPY8P0CW00 308 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 STAT2P52630 851 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 PSMC6P62333 389 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 IKQ13123 557 aaPredicted RBP16.62■□□□□ 0.25
VARS-227ENST00000489979 PPP2R2DQ66LE6 453 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 EEPD1Q7L9B9 569 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 RPUSD2Q8IZ73 545 aaKnown RBP16.62■□□□□ 0.25
VARS-227ENST00000489979 CHURC1Q8WUH1 139 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 STAG1Q8WVM7 1258 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 TRERF1Q96PN7 1200 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 SEZ6LQ9BYH1 1024 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 TSPYL2Q9H2G4 693 aaPredicted RBP16.62■□□□□ 0.25
VARS-227ENST00000489979 PLIN4Q96Q06 1357 aa16.62■□□□□ 0.25
VARS-227ENST00000489979 ZBBXA8MT70 800 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 ALAS1P13196 640 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 GNAT2P19087 354 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 TKFCQ3LXA3 575 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 TMEM63BQ5T3F8 832 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 TAPT1Q6NXT6 567 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 FAM160B2Q86V87 743 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 FBXO16Q8IX29 292 aaPredicted RBP16.61■□□□□ 0.25
VARS-227ENST00000489979 IFNL3Q8IZI9 196 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 NEDD1Q8NHV4 660 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 VWCEQ96DN2 955 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 SCLYQ96I15 445 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 NECAB3Q96P71 396 aaPredicted RBP16.61■□□□□ 0.25
VARS-227ENST00000489979 PCDHA11Q9Y5I1 949 aa16.61■□□□□ 0.25
VARS-227ENST00000489979 PATL2C9JE40 543 aaKnown RBP16.6■□□□□ 0.25
VARS-227ENST00000489979 MCCP23508 829 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 SLC1A4P43007 532 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 SNAP25P60880 206 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 TFAP4Q01664 338 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 TSHZ3Q63HK5 1081 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 IQSEC1Q6DN90 963 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 CHMP4BQ9H444 224 aaKnown RBP16.6■□□□□ 0.25
VARS-227ENST00000489979 Q9Y3F1 56 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 LCTP09848 1927 aa16.6■□□□□ 0.25
VARS-227ENST00000489979 PRRC2BQ5JSZ5 2229 aaKnown RBP16.6■□□□□ 0.25
VARS-227ENST00000489979 BMP1P13497 986 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 ATP2A2P16615 1042 aaKnown RBP16.59■□□□□ 0.25
VARS-227ENST00000489979 TFF2Q03403 129 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 PDE4BQ07343 736 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 MUM1L1Q5H9M0 696 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 KIAA1211Q6ZU35 1233 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 KCTD1Q719H9 257 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 GMCL1Q96IK5 515 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 ALDH8A1Q9H2A2 487 aaPredicted RBP16.59■□□□□ 0.25
VARS-227ENST00000489979 CYP39A1Q9NYL5 469 aa16.59■□□□□ 0.25
VARS-227ENST00000489979 SCN5AQ14524 2016 aa16.58■□□□□ 0.25
VARS-227ENST00000489979 ZFYP08048 801 aaPredicted RBP16.58■□□□□ 0.24
VARS-227ENST00000489979 TTLL4Q14679 1199 aa16.58■□□□□ 0.24
VARS-227ENST00000489979 SKIV2LQ15477 1246 aaKnown RBP16.58■□□□□ 0.24
VARS-227ENST00000489979 PURBQ96QR8 312 aaKnown RBP16.58■□□□□ 0.24
VARS-227ENST00000489979 VTA1Q9NP79 307 aa16.58■□□□□ 0.24
VARS-227ENST00000489979 TRMT13Q9NUP7 481 aaKnown RBP16.58■□□□□ 0.24
VARS-227ENST00000489979 RFXAPO00287 272 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 PLA2G6O60733 806 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 SLC3A2P08195 630 aaKnown RBP16.57■□□□□ 0.24
VARS-227ENST00000489979 CYP2C9P11712 490 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 PLA2G5P39877 138 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 NSMFQ6X4W1 530 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 RASGRP2Q7LDG7 609 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 DEFB128Q7Z7B8 93 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 GPATCH3Q96I76 525 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 SEC62Q99442 399 aaKnown RBP16.57■□□□□ 0.24
VARS-227ENST00000489979 NACAP1Q9BZK3 213 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 PRR12Q9ULL5 1215 aa16.57■□□□□ 0.24
VARS-227ENST00000489979 TRANK1O15050 2925 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 TNKSO95271 1327 aa16.56■□□□□ 0.24
VARS-227ENST00000489979 CA3P07451 260 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms