RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 PDGFCQ9NRA1 345 aa15.67■□□□□ 0.1
CPSF4-210ENST00000469897 TCP11L1Q9NUJ3 509 aa15.67■□□□□ 0.1
CPSF4-210ENST00000469897 CYP39A1Q9NYL5 469 aa15.67■□□□□ 0.1
CPSF4-210ENST00000469897 ELP1O95163 1332 aa15.67■□□□□ 0.1
CPSF4-210ENST00000469897 DLL1O00548 723 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 DYNC1LI2O43237 492 aaPredicted RBP15.66■□□□□ 0.1
CPSF4-210ENST00000469897 ICAM1P05362 532 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 AAMPQ13685 434 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 TMEM63BQ5T3F8 832 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 BTNL9Q6UXG8 535 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 MFSD6Q6ZSS7 791 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 PLEKHM2Q8IWE5 1019 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 SEMA6BQ9H3T3 888 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 GREB1LQ9C091 1923 aaPredicted RBP15.66■□□□□ 0.1
CPSF4-210ENST00000469897 ASTN1O14525 1302 aa15.66■□□□□ 0.1
CPSF4-210ENST00000469897 ARVCFO00192 962 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 TIMP1P01033 207 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 SMPD1P17405 629 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 FPGSQ05932 587 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 BAATQ14032 418 aaPredicted RBP15.65■□□□□ 0.1
CPSF4-210ENST00000469897 AKNAD1Q5T1N1 836 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 ZNF697Q5TEC3 545 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 SYDE2Q5VT97 1194 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 IQSEC1Q6DN90 963 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 TAPT1Q6NXT6 567 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 EXOC6Q8TAG9 804 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 TTC14Q96N46 770 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 RANBP17Q9H2T7 1088 aaKnown RBP15.65■□□□□ 0.1
CPSF4-210ENST00000469897 GNEQ9Y223 722 aaKnown RBP15.65■□□□□ 0.1
CPSF4-210ENST00000469897 CCDC171Q6TFL3 1326 aa15.65■□□□□ 0.1
CPSF4-210ENST00000469897 ZNF213O14771 459 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 NKX3-2P78367 333 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 SMAD3P84022 425 aaKnown RBP15.64■□□□□ 0.09
CPSF4-210ENST00000469897 NUCB1Q02818 461 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 CXCL17Q6UXB2 119 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 TBC1D10CQ8IV04 446 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 RNPC3Q96LT9 517 aaKnown RBP15.64■□□□□ 0.09
CPSF4-210ENST00000469897 ZKSCAN3Q9BRR0 538 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 AP5M1Q9H0R1 490 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 OSBPL3Q9H4L5 887 aa15.64■□□□□ 0.09
CPSF4-210ENST00000469897 MYH7P12883 1935 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 A0A0U1RQG5 324 aaPredicted RBP15.63■□□□□ 0.09
CPSF4-210ENST00000469897 NFIBO00712 420 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 PDHBP11177 359 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 CWC27Q6UX04 472 aaKnown RBP15.63■□□□□ 0.09
CPSF4-210ENST00000469897 KIAA1211Q6ZU35 1233 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 FBXO16Q8IX29 292 aaPredicted RBP15.63■□□□□ 0.09
CPSF4-210ENST00000469897 CDX2Q99626 313 aaPredicted RBP15.63■□□□□ 0.09
CPSF4-210ENST00000469897 TBX21Q9UL17 535 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 DNAH12Q6ZR08 3092 aa15.63■□□□□ 0.09
CPSF4-210ENST00000469897 MFAP1P55081 439 aaKnown RBP15.62■□□□□ 0.09
CPSF4-210ENST00000469897 ZNF543Q08ER8 600 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 MFSD5Q6N075 450 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 C16orf59Q7L2K0 433 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 TLK2Q86UE8 772 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 FAM126BQ8IXS8 530 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 CLEC4DQ8WXI8 215 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 ESR2Q92731 530 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 TTYH1Q9H313 450 aaPredicted RBP15.62■□□□□ 0.09
CPSF4-210ENST00000469897 RNF41Q9H4P4 317 aaPredicted RBP15.62■□□□□ 0.09
CPSF4-210ENST00000469897 MYH8P13535 1937 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 ZMYM6O95789 1325 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 MROH7Q68CQ1 1323 aa15.62■□□□□ 0.09
CPSF4-210ENST00000469897 COL11A1P12107 1806 aaPredicted RBP15.61■□□□□ 0.09
CPSF4-210ENST00000469897 PARP14Q460N5 1801 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 PTPDC1A2A3K4 754 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 TLR3O15455 904 aaKnown RBP15.61■□□□□ 0.09
CPSF4-210ENST00000469897 GOLGA8HP0CJ92 632 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 PCP11498 1178 aaKnown RBP15.61■□□□□ 0.09
CPSF4-210ENST00000469897 CSF2RAP15509 400 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 CALML3P27482 149 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 FSCN1Q16658 493 aaKnown RBP15.61■□□□□ 0.09
CPSF4-210ENST00000469897 MORC4Q8TE76 937 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.61■□□□□ 0.096e-11■■■■■ 39.2
CPSF4-210ENST00000469897 PPP1R12CQ9BZL4 782 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 UBA5Q9GZZ9 404 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 ADD3Q9UEY8 706 aaKnown RBP15.61■□□□□ 0.09
CPSF4-210ENST00000469897 FRMPD3Q5JV73 1810 aa15.61■□□□□ 0.09
CPSF4-210ENST00000469897 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.6■□□□□ 0.09
CPSF4-210ENST00000469897 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.6■□□□□ 0.09
CPSF4-210ENST00000469897 ZEB2O60315 1214 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 CD4P01730 458 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 SNHG28P0DPA3 235 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 ACRP10323 421 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 ALDH5A1P51649 535 aaPredicted RBP15.6■□□□□ 0.09
CPSF4-210ENST00000469897 PSMC6P62333 389 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 ITGA7Q13683 1181 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 SLC30A10Q6XR72 485 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 DGKHQ86XP1 1220 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 TMEM199Q8N511 208 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 SLC43A3Q8NBI5 491 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 WDR11Q9BZH6 1224 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 CPVLQ9H3G5 476 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 VTA1Q9NP79 307 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 DIAPH3Q9NSV4 1193 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 Q9Y3F1 56 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 GRIN2DO15399 1336 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 NEDD4P46934 1319 aa15.6■□□□□ 0.09
CPSF4-210ENST00000469897 KDM4AO75164 1064 aa15.59■□□□□ 0.09
CPSF4-210ENST00000469897 CABYRO75952 493 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms