RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 METAP2P50579 478 aaKnown RBP eCLIP12.39□□□□□ -0.432e-13■□□□□ 8.6
UBR4-208ENST00000459947 C8orf34Q49A92 452 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 CHST3Q7LGC8 479 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 CCDC12Q8WUD4 166 aaPredicted RBP12.39□□□□□ -0.43
UBR4-208ENST00000459947 AKAP17AQ02040 695 aaKnown RBP12.39□□□□□ -0.43
UBR4-208ENST00000459947 QRICH1Q2TAL8 776 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 POTEEQ6S8J3 1075 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 EHMT1Q9H9B1 1298 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 RPTORQ8N122 1335 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 GHRHRQ02643 423 aa12.39□□□□□ -0.43
UBR4-208ENST00000459947 HMX1Q9NP08 348 aaPredicted RBP12.39□□□□□ -0.43
UBR4-208ENST00000459947 INHAP05111 366 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 GOLGA8HP0CJ92 632 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 ZNF792Q3KQV3 632 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 DNERQ8NFT8 737 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 CUL5Q93034 780 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 DNAJC25-GNG10A0A024R161 153 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 MICU3Q86XE3 530 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 BRF1Q92994 677 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 UBA5Q9GZZ9 404 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 ZSWIM8A7E2V4 1837 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 RABEP1Q15276 862 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 MAMDC4Q6UXC1 1216 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 AGBL1Q96MI9 1066 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 CNPY2Q9Y2B0 182 aa12.38□□□□□ -0.43
UBR4-208ENST00000459947 TRIM22Q8IYM9 498 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 RBM25P49756 843 aaKnown RBP12.37□□□□□ -0.43
UBR4-208ENST00000459947 RNF207Q6ZRF8 634 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 ANKLE1Q8NAG6 615 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 MAML3Q96JK9 1138 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 NAP1L2Q9ULW6 460 aaPredicted RBP12.37□□□□□ -0.43
UBR4-208ENST00000459947 MAP3K21Q5TCX8 1036 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 STAG2Q8N3U4 1231 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 FAM133AQ8N9E0 248 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 ZSCAN31Q96LW9 406 aaPredicted RBP12.37□□□□□ -0.43
UBR4-208ENST00000459947 C22orf23Q9BZE7 217 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 GJB1P08034 283 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 SLC4A3P48751 1232 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 NSMFQ6X4W1 530 aa12.37□□□□□ -0.43
UBR4-208ENST00000459947 A1CFQ9NQ94 594 aaKnown RBP12.37□□□□□ -0.43
UBR4-208ENST00000459947 MYH6P13533 1939 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 TINF2Q9BSI4 451 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.36□□□□□ -0.43
UBR4-208ENST00000459947 VAT1LQ9HCJ6 419 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 PLXNA1Q9UIW2 1896 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 PCDHA1Q9Y5I3 950 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 CPLX1O14810 134 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 MCM2P49736 904 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 CCDC148Q8NFR7 591 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 IWS1Q96ST2 819 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 RNF26Q9BY78 433 aaPredicted RBP12.36□□□□□ -0.43
UBR4-208ENST00000459947 LRRC2Q9BYS8 371 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 CYP39A1Q9NYL5 469 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 ZNFX1Q9P2E3 1918 aaKnown RBP12.36□□□□□ -0.43
UBR4-208ENST00000459947 CCL5P13501 91 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 XRRA1Q6P2D8 792 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 TRIB2Q92519 343 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 PIGSQ96S52 555 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 VTA1Q9NP79 307 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 HOMER2Q9NSB8 354 aa12.36□□□□□ -0.43
UBR4-208ENST00000459947 GCOM1H8Y6P7 765 aaPredicted RBP12.35□□□□□ -0.43
UBR4-208ENST00000459947 POLR2MP0CAP2 368 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 MORC4Q8TE76 937 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 WASF1Q92558 559 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 ABHD16BQ9H3Z7 469 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 SENP2Q9HC62 589 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 RIPK3Q9Y572 518 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 PTPDC1A2A3K4 754 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 ST18O60284 1047 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 COBLO75128 1261 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 APOBRQ0VD83 1088 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 CCDC85CA6NKD9 419 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 PRPF3O43395 683 aaKnown RBP12.35□□□□□ -0.43
UBR4-208ENST00000459947 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
UBR4-208ENST00000459947 IFNAR1P17181 557 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 HOMER1Q86YM7 354 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 NPLOC4Q8TAT6 608 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 CLEC4DQ8WXI8 215 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 BRPF3Q9ULD4 1205 aa12.35□□□□□ -0.43
UBR4-208ENST00000459947 CNTNAP5Q8WYK1 1306 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 STAM2O75886 525 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 IGHA2P01877 340 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 NSUN6Q8TEA1 469 aaKnown RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 SLKQ9H2G2 1235 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 SH2B1Q9NRF2 756 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 ELNP15502 786 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 XBP1P17861 261 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 USH1GQ495M9 461 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 RASGRP2Q7LDG7 609 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 BICD2Q8TD16 824 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 SH3TC2Q8TF17 1288 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 RNF208Q9H0X6 261 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 GPHNQ9NQX3 736 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 SH3GLB2Q9NR46 395 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 STK36Q9NRP7 1315 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 ESYT2A0FGR8 921 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 FOSP01100 380 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 CYBAP13498 195 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 PDIA3P30101 505 aaKnown RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 HSD17B4P51659 736 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms