RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TRIM75PA6NK02 468 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 ANXA1P04083 346 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 RBM6P78332 1123 aaKnown RBP14.51□□□□□ -0.09
USP40-208ENST00000450966 GUCY2DQ02846 1103 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 UNC5CLQ8IV45 518 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 ZBTB40Q9NUA8 1239 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 RNF14Q9UBS8 474 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 MYOM2P54296 1465 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 SPDYE3A6NKU9 549 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 DIAPH2O60879 1101 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 TRPA1O75762 1119 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 CHMLP26374 656 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 CTCFP49711 727 aaPredicted RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 ARHGEF18Q6ZSZ5 1173 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 SPDYE1Q8NFV5 336 aaPredicted RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 ST7Q9NRC1 585 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 BIN2Q9UBW5 565 aaPredicted RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 CTNND2Q9UQB3 1225 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 KCNA4P22459 653 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 ATP2B4P23634 1241 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 MSH2P43246 934 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 NAPAP54920 295 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 DCAF15Q66K64 600 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 RCSD1Q6JBY9 416 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 MSANTD4Q8NCY6 345 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 MRPL46Q9H2W6 279 aaKnown RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 EYA2O00167 538 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 GNA11P29992 359 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 OTUD7BQ6GQQ9 843 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 OLFML1Q6UWY5 402 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 AFAP1L2Q8N4X5 818 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 VIPAS39Q9H9C1 493 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP40-208ENST00000450966 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 SPAG7O75391 227 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 DCTN3O75935 186 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 GRM1Q13255 1194 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 BIRC3Q13489 604 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 TMEM154Q6P9G4 183 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 MAML3Q96JK9 1138 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 A2ML1A8K2U0 1454 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 ARHGAP31Q2M1Z3 1444 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 KCNH3Q9ULD8 1083 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 PACSIN2Q9UNF0 486 aaPredicted RBP14.5□□□□□ -0.09
USP40-208ENST00000450966 ATP7BP35670 1465 aa14.5□□□□□ -0.09
USP40-208ENST00000450966 SHROOM2Q13796 1616 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 MAPK13O15264 365 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 CCDC15Q0P6D6 951 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 UAP1Q16222 522 aaPredicted RBP14.49□□□□□ -0.09
USP40-208ENST00000450966 ZNF710Q8N1W2 664 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 KCNV2Q8TDN2 545 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 TEKT1Q969V4 418 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 MCM9Q9NXL9 1143 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 ASIC3Q9UHC3 531 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 TMEM110-MUSTN1A8MSY1 372 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 GSTA2P09210 222 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 IFNAR2P48551 515 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 OLFML2BQ68BL8 750 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 PSMB7Q99436 277 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 CUTAO60888 179 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 PARP1P09874 1014 aaKnown RBP14.49□□□□□ -0.09
USP40-208ENST00000450966 ASIC1P78348 528 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 PLCB3Q01970 1234 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 PDP2Q9P2J9 529 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 GNAT1P11488 350 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 PAX7P23759 505 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 CUL4BQ13620 913 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 MAIP1Q8WWC4 291 aa14.49□□□□□ -0.09
USP40-208ENST00000450966 SART1O43290 800 aaKnown RBP14.48□□□□□ -0.09
USP40-208ENST00000450966 GGCXP38435 758 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 PDE6CP51160 858 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 MRPS15P82914 257 aaKnown RBP14.48□□□□□ -0.09
USP40-208ENST00000450966 SEMA3FQ13275 785 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 ANO1Q5XXA6 986 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 KIAA0825Q8IV33 1275 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 DBNLQ9UJU6 430 aaKnown RBP14.48□□□□□ -0.09
USP40-208ENST00000450966 IQSEC3Q9UPP2 1182 aaPredicted RBP14.48□□□□□ -0.09
USP40-208ENST00000450966 SLC4A7Q9Y6M7 1214 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 PAK1Q13153 545 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 MIEF2Q96C03 454 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 IL17RAQ96F46 866 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 ATP6V0A4Q9HBG4 840 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 NAA30Q147X3 362 aaPredicted RBP14.48□□□□□ -0.09
USP40-208ENST00000450966 CTAGE3PQ8IX95 158 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 ANLNQ9NQW6 1124 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 CD2APQ9Y5K6 639 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 ADCY2Q08462 1091 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 SARM1Q6SZW1 724 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 USP33Q8TEY7 942 aa14.48□□□□□ -0.09
USP40-208ENST00000450966 PSMC1P62191 440 aaKnown RBP14.47□□□□□ -0.09
USP40-208ENST00000450966 CREB3L3Q68CJ9 461 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 FNBP4Q8N3X1 1017 aaPredicted RBP14.47□□□□□ -0.09
USP40-208ENST00000450966 LPIN2Q92539 896 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 FTOQ9C0B1 505 aaKnown RBP eCLIP14.47□□□□□ -0.09
USP40-208ENST00000450966 EIF3HO15372 352 aaKnown RBP eCLIP14.47□□□□□ -0.098e-6■■□□□ 11.4
USP40-208ENST00000450966 ITGA6P23229 1130 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 SERPINB3P29508 390 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 INPP1P49441 399 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 DLGAP5Q15398 846 aa14.47□□□□□ -0.09
USP40-208ENST00000450966 CCDC14Q49A88 953 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms