RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 F6X3S4 739 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 GDF11O95390 407 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 PTPRAP18433 802 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 PTPREP23469 700 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 ELF1P32519 619 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 BMP8BP34820 402 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 MCM6Q14566 821 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 E2F5Q15329 346 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 IMMTQ16891 758 aaKnown RBP9.15□□□□□ -0.94
LIMS1-203ENST00000393310 SPATS2LQ9NUQ6 558 aaKnown RBP9.15□□□□□ -0.94
LIMS1-203ENST00000393310 NR2E1Q9Y466 385 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 KIAA0100Q14667 2235 aaKnown RBP9.15□□□□□ -0.94
LIMS1-203ENST00000393310 CPLX1O14810 134 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 PPFIA3O75145 1194 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 GH1P01241 217 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 BMP3P12645 472 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 TTC31Q49AM3 519 aaPredicted RBP9.15□□□□□ -0.94
LIMS1-203ENST00000393310 HSP90B2PQ58FF3 399 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 CDC42EP5Q6NZY7 148 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 URGCPQ8TCY9 931 aa9.15□□□□□ -0.94
LIMS1-203ENST00000393310 SEC24BO95487 1268 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 HIRAP54198 1017 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 RNASELQ05823 741 aaKnown RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 JAKMIP3Q5VZ66 844 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC102BQ68D86 513 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 MYOCDQ8IZQ8 938 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 C11orf84Q9BUA3 381 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 SLKQ9H2G2 1235 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 ZBED9Q6R2W3 1325 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 USP34Q70CQ2 3546 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC69A6NI79 296 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 TBC1D12O60347 775 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 GBP2P32456 591 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 CDC42EP1Q00587 391 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 MYBPC2Q14324 1141 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 LRIT3Q3SXY7 679 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 IQSEC1Q6DN90 963 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 LRSAM1Q6UWE0 723 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC47Q96A33 483 aaKnown RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 SYAP1Q96A49 352 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 ZNF594Q96JF6 807 aaPredicted RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 GCNAQ96QF7 691 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 SDF4Q9BRK5 362 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 TCP11L1Q9NUJ3 509 aa9.15□□□□□ -0.95
LIMS1-203ENST00000393310 DIS3Q9Y2L1 958 aaKnown RBP9.15□□□□□ -0.95
LIMS1-203ENST00000393310 ELP1O95163 1332 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 RPAP1Q9BWH6 1393 aaPredicted RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 YDJCA8MPS7 323 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 ZBTB17Q13105 803 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 B4GALNT3Q6L9W6 998 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 GPR161Q8N6U8 529 aaKnown RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 TRIML1Q8N9V2 468 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 CAGE1Q8TC20 777 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 P2RX7Q99572 595 aaKnown RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 MTA3Q9BTC8 594 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 BICC1Q9H694 974 aaKnown RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 CNNM2Q9H8M5 875 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC196A0A1B0GTZ2 297 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 PTPAQ15257 358 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 AKNAD1Q5T1N1 836 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 PPP4R4Q6NUP7 873 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 CATIPQ7Z7H3 387 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 FAM84BQ96KN1 310 aaPredicted RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 SEPT11Q9NVA2 429 aaKnown RBP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 NEBLO76041 1014 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 STAT2P52630 851 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 SAFBQ15424 915 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMS1-203ENST00000393310 STXBP2Q15833 593 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 ATL2Q8NHH9 583 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 ZBTB9Q96C00 473 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 ZNF576Q9H609 170 aa9.14□□□□□ -0.95
LIMS1-203ENST00000393310 WTIPA6NIX2 430 aaPredicted RBP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 IGF2BP3O00425 579 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 PPP1R12AO14974 1030 aaPredicted RBP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 CALML3P27482 149 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 GJC2Q5T442 439 aaPredicted RBP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 HAUS6Q7Z4H7 955 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 KCNH6Q9H252 994 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 VTA1Q9NP79 307 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 GPR108Q9NPR9 543 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 U3KPZ7 1027 aaPredicted RBP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 LMO7Q8WWI1 1683 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 SKIP12755 728 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 SPATC1LQ9H0A9 340 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 TPX2Q9ULW0 747 aaKnown RBP9.13□□□□□ -0.95
LIMS1-203ENST00000393310 POTEFA5A3E0 1075 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 DPYSL4O14531 572 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 NEDD9Q14511 834 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 IER5Q5VY09 327 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 C17orf99Q6UX52 265 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 MFSD6Q6ZSS7 791 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 ARNTL2Q8WYA1 636 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 KRT23Q9C075 422 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 SAMM50Q9Y512 469 aa9.13□□□□□ -0.95
LIMS1-203ENST00000393310 COL18A1P39060 1754 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DYTNA2CJ06 578 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DENND3A2RUS2 1198 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 BAG4O95429 457 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 PSMC1P62191 440 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 GPATCH4Q5T3I0 446 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms