RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IFI16Q16666 785 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 ARHGAP29Q52LW3 1261 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 PNMA1Q8ND90 353 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 RNPC3Q96LT9 517 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 USP25Q9UHP3 1055 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 IRS2Q9Y4H2 1338 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 K7ENM7 598 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 MOCS3O95396 460 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 BFSP1Q12934 665 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 RAPGEF1Q13905 1077 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 ASPRV1Q53RT3 343 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 ZNF697Q5TEC3 545 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 IRAK1BP1Q5VVH5 260 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 LUZP1Q86V48 1076 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 FAM177A1Q8N128 213 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 AFG1LQ8WV93 481 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 TOPORSQ9NS56 1045 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 EIF2AK4Q9P2K8 1649 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 MED14O60244 1454 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 SYCE3A1L190 88 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 OSTNP61366 133 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 RASGRF1Q13972 1273 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 LONRF3Q496Y0 759 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 LRCH2Q5VUJ6 765 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 TRIM50Q86XT4 487 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 FSIP1Q8NA03 581 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 DHX58Q96C10 678 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 IPPQ9Y573 584 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 ZNF233A6NK53 670 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 SPDYE1Q8NFV5 336 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 TBC1D31Q96DN5 1066 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 RMDN3Q96TC7 470 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 ITM2BQ9Y287 266 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 AFG3L2Q9Y4W6 797 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 FAM196BA6NMK8 535 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PDHXO00330 501 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 GEN1Q17RS7 908 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 TMC7Q7Z402 723 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 SUGP1Q8IWZ8 645 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 MB21D1Q8N884 522 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 SKA1Q96BD8 255 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 ATP6V0A4Q9HBG4 840 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PFDN4Q9NQP4 134 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 USP19O94966 1318 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 FSD2A1L4K1 749 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PFDN6O15212 129 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 GH1P01241 217 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 NOLC1Q14978 699 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 DCUN1D2Q6PH85 259 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 CSGALNACT1Q8TDX6 532 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 RSPH10B2B2RC85 870 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 MBD3O95983 291 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 RSPH10BP0C881 870 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 CYP19A1P11511 503 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PHKA1P46020 1223 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PLCD1P51178 756 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PPP2R5CQ13362 524 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 KCNV1Q6PIU1 500 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 UBN1Q9NPG3 1134 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 TCOF1Q13428 1488 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 DEXIO95424 95 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 THPOP40225 353 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PHKA2P46019 1235 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 AK2P54819 239 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 CYP4A22Q5TCH4 519 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 SOCS4Q8WXH5 440 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 TTC25Q96NG3 672 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 SUDS3Q9H7L9 328 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 PNPLA6Q8IY17 1366 aa10.19□□□□□ -0.78
LIMCH1-202ENST00000381753 ADM5C9JUS6 153 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 SNAP25P60880 206 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 HERC4Q5GLZ8 1057 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 MRPL50Q8N5N7 158 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 PRPF38AQ8NAV1 312 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 TCEANC2Q96MN5 208 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 DEFB118Q96PH6 123 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 H0YHG0 523 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 C2CD2LO14523 706 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 GIPC1O14908 333 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 EPHB1P54762 984 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 HLFQ16534 295 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 AKAP7Q9P0M2 348 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 RPS6KA5O75582 802 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 TBC1D16Q8TBP0 767 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 ZMYND8Q9ULU4 1186 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 PPP2R3BQ9Y5P8 575 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 TRAF5O00463 557 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 MSCO60682 206 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 LBX1P52954 281 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 PTPAQ15257 358 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 ADALQ6DHV7 355 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 GLB1LQ6UWU2 654 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 HERC5Q9UII4 1024 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 PCDHB13Q9Y5F0 798 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 BICDL2A1A5D9 508 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 VWA3AA6NCI4 1184 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 FDX1P10109 184 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 CCDC85BQ15834 202 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 LRRC24Q50LG9 513 aa10.18□□□□□ -0.78
LIMCH1-202ENST00000381753 G2E3Q7L622 706 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms