RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TSEN34Q9BSV6 310 aaKnown RBP22.93■■□□□ 1.26
LIME1-201ENST00000309546 SPC25Q9HBM1 224 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 STARD7Q9NQZ5 370 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 DDX49Q9Y6V7 483 aaKnown RBP22.93■■□□□ 1.26
LIME1-201ENST00000309546 PQBP1O60828 265 aaKnown RBP22.92■■□□□ 1.26
LIME1-201ENST00000309546 KCNA10Q16322 511 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 LRIT3Q3SXY7 679 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 NOL8Q76FK4 1167 aaKnown RBP22.92■■□□□ 1.26
LIME1-201ENST00000309546 SH3RF1Q7Z6J0 888 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 KATNBL1Q9H079 304 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 IL25Q9H293 177 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 CTNNA3Q9UI47 895 aa22.92■■□□□ 1.26
LIME1-201ENST00000309546 LAMA3Q16787 3333 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 ASTN1O14525 1302 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 MOXD2PA6NHM9 499 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 GOLGA8HP0CJ92 632 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 EEPD1Q7L9B9 569 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 KLHDC9Q8NEP7 349 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 NUP133Q8WUM0 1156 aa22.91■■□□□ 1.26
LIME1-201ENST00000309546 PURBQ96QR8 312 aaKnown RBP22.91■■□□□ 1.26
LIME1-201ENST00000309546 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.9■■□□□ 1.26
LIME1-201ENST00000309546 NFIBO00712 420 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 SNHG28P0DPA3 235 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 CCDC178Q5BJE1 867 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 DGKHQ86XP1 1220 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 FBXO16Q8IX29 292 aaPredicted RBP22.9■■□□□ 1.26
LIME1-201ENST00000309546 PNMA1Q8ND90 353 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 KAT14Q9H8E8 782 aa22.9■■□□□ 1.26
LIME1-201ENST00000309546 PTPDC1A2A3K4 754 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 TRIM43BA6NCK2 446 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 CLTBP09497 229 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 CST5P28325 142 aaPredicted RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 NT5C2P49902 561 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 GJA9P57773 515 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 TNFAIP2Q03169 654 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 BAATQ14032 418 aaPredicted RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 GNASQ5JWF2 1037 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 GPATCH4Q5T3I0 446 aaKnown RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 CCSAPQ6IQ19 270 aaPredicted RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 PCSK9Q8NBP7 692 aaKnown RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 BADQ92934 168 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 TRIM43Q96BQ3 446 aaPredicted RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 GLT1D1Q96MS3 346 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 ZSCAN10Q96SZ4 725 aaPredicted RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 UPF3AQ9H1J1 476 aaKnown RBP22.89■■□□□ 1.25
LIME1-201ENST00000309546 CPVLQ9H3G5 476 aa22.89■■□□□ 1.25
LIME1-201ENST00000309546 TNKSO95271 1327 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 RAD50Q92878 1312 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 ASGR1P07306 291 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 SLC30A10Q6XR72 485 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 VTI1AQ96AJ9 217 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 KRT23Q9C075 422 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 UBA5Q9GZZ9 404 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 MYH6P13533 1939 aa22.88■■□□□ 1.25
LIME1-201ENST00000309546 CALML3P27482 149 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 BEX3Q00994 111 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 TLK2Q86UE8 772 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 ENAHQ8N8S7 591 aaPredicted RBP22.87■■□□□ 1.25
LIME1-201ENST00000309546 UBAC1Q9BSL1 405 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 CNNM2Q9H8M5 875 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 ZSWIM5Q9P217 1185 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 ADD3Q9UEY8 706 aaKnown RBP22.87■■□□□ 1.25
LIME1-201ENST00000309546 PNMA2Q9UL42 364 aa22.87■■□□□ 1.25
LIME1-201ENST00000309546 WDR19Q8NEZ3 1342 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 PTGS1P23219 599 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 ALDH5A1P51649 535 aaPredicted RBP22.86■■□□□ 1.25
LIME1-201ENST00000309546 USH1GQ495M9 461 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 RNF207Q6ZRF8 634 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 RUFY2Q8WXA3 655 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 CLEC4DQ8WXI8 215 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 PDGFCQ9NRA1 345 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 TMEM39AQ9NV64 488 aa22.86■■□□□ 1.25
LIME1-201ENST00000309546 DCDC2CA8MYV0 355 aa22.85■■□□□ 1.25
LIME1-201ENST00000309546 Q7L0L9 218 aa22.85■■□□□ 1.25
LIME1-201ENST00000309546 CTAGE5O15320 804 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 DHX16O60231 1041 aaKnown RBP22.84■■□□□ 1.25
LIME1-201ENST00000309546 RAG1P15918 1043 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 SMPD1P17405 629 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 ITGB8P26012 769 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 CHMLP26374 656 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 CDC37Q16543 378 aaPredicted RBP22.84■■□□□ 1.25
LIME1-201ENST00000309546 C9orf50Q5SZB4 431 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 GPR153Q6NV75 609 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 TAPT1Q6NXT6 567 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 KIAA1211Q6ZU35 1233 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 ANKRD33Q7Z3H0 272 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 DEFB123Q8N688 67 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 ANKS1AQ92625 1134 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 AP5M1Q9H0R1 490 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 VTA1Q9NP79 307 aa22.84■■□□□ 1.25
LIME1-201ENST00000309546 GNEQ9Y223 722 aaKnown RBP22.84■■□□□ 1.25
LIME1-201ENST00000309546 ELP1O95163 1332 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 A0A0U1RQG5 324 aaPredicted RBP22.83■■□□□ 1.25
LIME1-201ENST00000309546 KIAA0355O15063 1070 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 DYNC1LI2O43237 492 aaPredicted RBP22.83■■□□□ 1.25
LIME1-201ENST00000309546 RPS6P62753 249 aaKnown RBP22.83■■□□□ 1.25
LIME1-201ENST00000309546 FAAP100Q0VG06 881 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 SHHQ15465 462 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 ASPRV1Q53RT3 343 aa22.83■■□□□ 1.25
LIME1-201ENST00000309546 IFIT1BQ5T764 474 aaKnown RBP22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms