RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CST5P28325 142 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 ACVR2BQ13705 512 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 UBE3CQ15386 1083 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 GNASQ5JWF2 1037 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 CCSAPQ6IQ19 270 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 ZSCAN25Q6NSZ9 544 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 RPAP2Q8IXW5 612 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 STK11IPQ8N1F8 1099 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 ANKRD35Q8N283 1001 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 TMEM199Q8N511 208 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 HAUS7Q99871 368 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 PBX4Q9BYU1 374 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 PPP1R12CQ9BZL4 782 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 ABHD16BQ9H3Z7 469 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 MKNK2Q9HBH9 465 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 ZBTB47Q9UFB7 747 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 RIPK3Q9Y572 518 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 MCM3APO60318 1980 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 NCOR1O75376 2440 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 XIRP2A4UGR9 3374 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 DNAJC25-GNG10A0A024R161 153 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 A0A0U1RQG5 324 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 F5H6K3 240 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 TLR3O15455 904 aaKnown RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 ZBED4O75132 1171 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 NDUFB10O96000 172 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 PBX2P40425 430 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 IRX5P78411 483 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 KLRC3Q07444 240 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 CCDC144BQ3MJ40 725 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 TMEM240Q5SV17 173 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 PSRC1Q6PGN9 363 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 ZNF467Q7Z7K2 595 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 EXOC6Q8TAG9 804 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 KIFC2Q96AC6 838 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 PUS7LQ9H0K6 701 aaKnown RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 PRDM12Q9H4Q4 367 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.35□□□□□ -0.91
CLK1-215ENST00000621181 MYH7P12883 1935 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 GRXCR1A8MXD5 290 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 ARVCFO00192 962 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 ATP2A1O14983 1001 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 ACRP10323 421 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 MS4A1P11836 297 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 NOL8Q76FK4 1167 aaKnown RBP9.34□□□□□ -0.91
CLK1-215ENST00000621181 ARMCX2Q7L311 632 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 ATXN2LQ8WWM7 1075 aaKnown RBP9.34□□□□□ -0.91
CLK1-215ENST00000621181 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLK1-215ENST00000621181 MTIF3Q9H2K0 278 aaKnown RBP9.34□□□□□ -0.91
CLK1-215ENST00000621181 RAVER2Q9HCJ3 691 aaKnown RBP9.34□□□□□ -0.91
CLK1-215ENST00000621181 HOMER2Q9NSB8 354 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 NYAP2Q9P242 653 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 CLIP2Q9UDT6 1046 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 FBXO40Q9UH90 709 aa9.34□□□□□ -0.91
CLK1-215ENST00000621181 ISY1Q9ULR0 285 aaKnown RBP9.34□□□□□ -0.91
CLK1-215ENST00000621181 MINDY4BA8MYZ0 360 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 ADCY6O43306 1168 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 COL9A1P20849 921 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 RASA1P20936 1047 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 IGFBP4P22692 258 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 CDK7P50613 346 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 GJA9P57773 515 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 ZNF365Q70YC5 407 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 C16orf59Q7L2K0 433 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 SIRT2Q8IXJ6 389 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 FAM126BQ8IXS8 530 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 CCDC144CPQ8IYA2 1237 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 IL27Q8NEV9 243 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 THEGQ9P2T0 379 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 MSRAQ9UJ68 235 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 DDX19BQ9UMR2 479 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 REV3LO60673 3130 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 MYH4Q9Y623 1939 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 CCDC85BQ15834 202 aaPredicted RBP9.33□□□□□ -0.92
CLK1-215ENST00000621181 AKNAD1Q5T1N1 836 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 ZNF444Q8N0Y2 327 aaPredicted RBP9.33□□□□□ -0.92
CLK1-215ENST00000621181 CHST13Q8NET6 341 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 UPF3AQ9H1J1 476 aaKnown RBP9.33□□□□□ -0.92
CLK1-215ENST00000621181 HIPK3Q9H422 1215 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 SLC28A3Q9HAS3 691 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 SLC38A10Q9HBR0 1119 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 ZNF287Q9HBT7 754 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 FEM1BQ9UK73 627 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 COG6Q9Y2V7 657 aa9.33□□□□□ -0.92
CLK1-215ENST00000621181 GREB1LQ9C091 1923 aaPredicted RBP9.32□□□□□ -0.92
CLK1-215ENST00000621181 APPP05067 770 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 CYP2C18P33260 490 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 TDO2P48775 406 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 OAZ1P54368 228 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 BEX3Q00994 111 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 RAB30Q15771 203 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 SBK1Q52WX2 424 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 RASIP1Q5U651 963 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 GIMAP6Q6P9H5 292 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 CEP95Q96GE4 821 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 ASB2Q96Q27 587 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 STRBPQ96SI9 672 aaKnown RBP9.32□□□□□ -0.92
CLK1-215ENST00000621181 ZBTB40Q9NUA8 1239 aa9.32□□□□□ -0.92
CLK1-215ENST00000621181 GSG1L2A8MUP6 293 aa9.31□□□□□ -0.92
CLK1-215ENST00000621181 PRDM1O75626 825 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms