RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 PARP14Q460N5 1801 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 PRKAB2O43741 272 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 GTPBP6O43824 516 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 ARHGEF15O94989 841 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 POU3F3P20264 500 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 TTLL4Q14679 1199 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 SLC9C2Q5TAH2 1124 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 LCORLQ8N3X6 602 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 SLC43A3Q8NBI5 491 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 SSH3Q8TE77 659 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 FRAT1Q92837 279 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 SWAP70Q9UH65 585 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 COG5Q9UP83 839 aa16.6■□□□□ 0.25
SHKBP1-208ENST00000595726 IPO8O15397 1037 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 PDE6AP16499 860 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 COPB2P35606 906 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 ATP8B2P98198 1209 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 ITGA7Q13683 1181 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 SLFNL1Q499Z3 407 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 TMEM67Q5HYA8 995 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 CPXCR1Q8N123 301 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 ARNTL2Q8WYA1 636 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 HLA-CQ95604 372 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 TEX13BQ9BXU2 312 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 ABHD16BQ9H3Z7 469 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 C1orf115Q9H7X2 142 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 ASTN1O14525 1302 aa16.59■□□□□ 0.25
SHKBP1-208ENST00000595726 B4GALT4O60513 344 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 CDK8P49336 464 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 PSMC6P62333 389 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 NOL8Q76FK4 1167 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 ARMCX2Q7L311 632 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 SPRED2Q7Z698 418 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 ZNF467Q7Z7K2 595 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 RPUSD2Q8IZ73 545 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 KATNBL1Q9H079 304 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 ARMT1Q9H993 441 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 ZNF532Q9HCE3 1301 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 TRIOO75962 3097 aa16.58■□□□□ 0.24
SHKBP1-208ENST00000595726 NAV1Q8NEY1 1877 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 PI4K2BG5E9Z4 385 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 DEFB128Q7Z7B8 93 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 CCDC144CPQ8IYA2 1237 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 CCDC17Q96LX7 622 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 AGBL1Q96MI9 1066 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 RAVER2Q9HCJ3 691 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 GOPCQ9HD26 462 aa16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 DDX49Q9Y6V7 483 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-208ENST00000595726 LRRC37A2A6NM11 1700 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 TCRBV5S4A2TA0A5A2 114 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 MRE11P49959 708 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 CNTN2Q02246 1040 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 TNFAIP2Q03169 654 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 TAP1Q03518 808 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 TMEM63BQ5T3F8 832 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 ZKSCAN2Q63HK3 967 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 ANKRD35Q8N283 1001 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 SLF1Q9BQI6 1058 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 KANSL2Q9H9L4 492 aa16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 NOP58Q9Y2X3 529 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-208ENST00000595726 DYNC1LI2O43237 492 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 CYP2C9P11712 490 aa16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 NKX3-2P78367 333 aa16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 GRB10Q13322 594 aa16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 TMED8Q6PL24 325 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 UIMC1Q96RL1 719 aa16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 MCM3APO60318 1980 aa16.55■□□□□ 0.24
SHKBP1-208ENST00000595726 USP17L12C9JPN9 530 aa16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 USP17L21D6R901 530 aa16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 FSCN1Q16658 493 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 C12orf60Q5U649 245 aa16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 AACSQ86V21 672 aa16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 TMEM57Q8N5G2 664 aa16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 GNEQ9Y223 722 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-208ENST00000595726 LPXNO60711 386 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 CABYRO75952 493 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 C16orf86Q6ZW13 317 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 TLK2Q86UE8 772 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 PRPF38AQ8NAV1 312 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 KIFC2Q96AC6 838 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 PDGFCQ9NRA1 345 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 TRMT13Q9NUP7 481 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 BRWD1Q9NSI6 2320 aa16.53■□□□□ 0.24
SHKBP1-208ENST00000595726 F5H6K3 240 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 GOLIM4O00461 696 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 ZBED4O75132 1171 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 MBD4O95243 580 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 CHGBP05060 677 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 SMPD1P17405 629 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 KLRC3Q07444 240 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 STK11IPQ8N1F8 1099 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 PPP1R13LQ8WUF5 828 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 SNX27Q96L92 541 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 DNAJC2Q99543 621 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 AP5M1Q9H0R1 490 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 ALDH8A1Q9H2A2 487 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 HOMER2Q9NSB8 354 aa16.52■□□□□ 0.24
SHKBP1-208ENST00000595726 SOWAHBA6NEL2 793 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms