RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ICAM1P05362 532 aa30.04■■■□□ 2.4
TRIM28-204ENST00000594806 HOXC6P09630 235 aa30.04■■■□□ 2.4
TRIM28-204ENST00000594806 APBA2Q99767 749 aa30.04■■■□□ 2.4
TRIM28-204ENST00000594806 TM6SF1Q9BZW5 370 aa30.04■■■□□ 2.4
TRIM28-204ENST00000594806 MAD2L2Q9UI95 211 aa30.04■■■□□ 2.4
TRIM28-204ENST00000594806 KIF5BP33176 963 aa30.03■■■□□ 2.4
TRIM28-204ENST00000594806 COL9A3Q14050 684 aaPredicted RBP30.03■■■□□ 2.4
TRIM28-204ENST00000594806 KCTD2Q14681 263 aa30.03■■■□□ 2.4
TRIM28-204ENST00000594806 RIPK3Q9Y572 518 aa30.03■■■□□ 2.4
TRIM28-204ENST00000594806 SLC12A7Q9Y666 1083 aa30.03■■■□□ 2.4
TRIM28-204ENST00000594806 KLRF2D3W0D1 207 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 CYP2B6P20813 491 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 ADORA2AP29274 412 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 ANAPC15P60006 121 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 SYNE3Q6ZMZ3 975 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 FBXL16Q8N461 479 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 CTCFLQ8NI51 663 aaPredicted RBP30.02■■■□□ 2.4
TRIM28-204ENST00000594806 MMP19Q99542 508 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 UBA5Q9GZZ9 404 aa30.02■■■□□ 2.4
TRIM28-204ENST00000594806 GPHNQ9NQX3 736 aaPredicted RBP30.02■■■□□ 2.4
TRIM28-204ENST00000594806 GNAQP50148 359 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 UBXN2AP68543 259 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 CCDC174Q6PII3 467 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 DPP9Q86TI2 863 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 ADGRF4Q8IZF3 695 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 ZNF333Q96JL9 665 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 LRRC2Q9BYS8 371 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 CCPG1Q9ULG6 757 aa30.01■■■□□ 2.39
TRIM28-204ENST00000594806 CASTP20810 708 aaKnown RBP30■■■□□ 2.39
TRIM28-204ENST00000594806 RPS6KB1P23443 525 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 SMARCA1P28370 1054 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 FGD1P98174 961 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 STAG2Q8N3U4 1231 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 NUP133Q8WUM0 1156 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 AGBL1Q96MI9 1066 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 LZTS2Q9BRK4 669 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 ACAD9Q9H845 621 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 ZSWIM6Q9HCJ5 1215 aa30■■■□□ 2.39
TRIM28-204ENST00000594806 HMGCRP04035 888 aa29.99■■■□□ 2.39
TRIM28-204ENST00000594806 SLC4A3P48751 1232 aa29.99■■■□□ 2.39
TRIM28-204ENST00000594806 C8orf34Q49A92 452 aa29.99■■■□□ 2.39
TRIM28-204ENST00000594806 SH3TC2Q8TF17 1288 aa29.99■■■□□ 2.39
TRIM28-204ENST00000594806 DIS3Q9Y2L1 958 aaKnown RBP29.99■■■□□ 2.39
TRIM28-204ENST00000594806 MYH6P13533 1939 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 DHX16O60231 1041 aaKnown RBP29.98■■■□□ 2.39
TRIM28-204ENST00000594806 RCAN1P53805 252 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 SNAP25P60880 206 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 RUFY3Q7L099 469 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 TRERF1Q96PN7 1200 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 RNF146Q9NTX7 359 aa29.98■■■□□ 2.39
TRIM28-204ENST00000594806 BIN2Q9UBW5 565 aaPredicted RBP29.98■■■□□ 2.39
TRIM28-204ENST00000594806 ALAS1P13196 640 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 ELNP15502 786 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 CDC37Q16543 378 aaPredicted RBP29.97■■■□□ 2.39
TRIM28-204ENST00000594806 IL17RAQ96F46 866 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 TCEANC2Q96MN5 208 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 MAF1Q9H063 256 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 RIOX1Q9H6W3 641 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 JMJD4Q9H9V9 463 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 CYP46A1Q9Y6A2 500 aa29.97■■■□□ 2.39
TRIM28-204ENST00000594806 CCDC85CA6NKD9 419 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 TRAF1Q13077 416 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 APOA5Q6Q788 366 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 Q6ZUG5 572 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 MTMR8Q96EF0 704 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 DDX11Q96FC9 970 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 AGXT2Q9BYV1 514 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 CPVLQ9H3G5 476 aa29.96■■■□□ 2.39
TRIM28-204ENST00000594806 SMCHD1A6NHR9 2005 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 COBLO75128 1261 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 OLFML2BQ68BL8 750 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 ANKRD35Q8N283 1001 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 FANCBQ8NB91 859 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 TRIB2Q92519 343 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 MYL10Q9BUA6 226 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 VAT1LQ9HCJ6 419 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 HOMER2Q9NSB8 354 aa29.95■■■□□ 2.39
TRIM28-204ENST00000594806 PFASO15067 1338 aa29.95■■■□□ 2.38
TRIM28-204ENST00000594806 INHAP05111 366 aa29.94■■■□□ 2.38
TRIM28-204ENST00000594806 CPA1P15085 419 aa29.94■■■□□ 2.38
TRIM28-204ENST00000594806 PPP2R5BQ15173 497 aa29.94■■■□□ 2.38
TRIM28-204ENST00000594806 NPLOC4Q8TAT6 608 aa29.94■■■□□ 2.38
TRIM28-204ENST00000594806 SPZ1Q9BXG8 430 aa29.94■■■□□ 2.38
TRIM28-204ENST00000594806 PLXNA1Q9UIW2 1896 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 BAZ2BQ9UIF8 2168 aaKnown RBP29.93■■■□□ 2.38
TRIM28-204ENST00000594806 DNAJC25-GNG10A0A024R161 153 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 ZBTB5O15062 677 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 ZBTB43O43298 467 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 SEC24BO95487 1268 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 QRICH1Q2TAL8 776 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 MFSD14CQ5VZR4 134 aa29.93■■■□□ 2.38
TRIM28-204ENST00000594806 RBM28Q9NW13 759 aaKnown RBP29.93■■■□□ 2.38
TRIM28-204ENST00000594806 ZNF792Q3KQV3 632 aa29.92■■■□□ 2.38
TRIM28-204ENST00000594806 FBXO11Q86XK2 927 aa29.92■■■□□ 2.38
TRIM28-204ENST00000594806 TMEM106CQ9BVX2 250 aa29.92■■■□□ 2.38
TRIM28-204ENST00000594806 AMNQ9BXJ7 453 aa29.92■■■□□ 2.38
TRIM28-204ENST00000594806 ABCB11O95342 1321 aa29.92■■■□□ 2.38
TRIM28-204ENST00000594806 KLF18A0A0U1RQI7 1052 aa29.91■■■□□ 2.38
TRIM28-204ENST00000594806 MICU3Q86XE3 530 aa29.91■■■□□ 2.38
TRIM28-204ENST00000594806 MSL3Q8N5Y2 521 aaKnown RBP29.91■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms