RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PHIPQ8WWQ0 1821 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 hCG_1642624A0A1W2PR95 340 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 DTNBO60941 627 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 TOMM70O94826 608 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 BAG4O95429 457 aaKnown RBP17.55■□□□□ 0.4
SS18-215ENST00000580642 MRPL12P52815 198 aaKnown RBP17.55■□□□□ 0.4
SS18-215ENST00000580642 GUCY1B3Q02153 619 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 FSTL1Q12841 308 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 CST9Q5W186 159 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 MOB2Q70IA6 237 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 NOSTRINQ8IVI9 506 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 ZNF396Q96N95 335 aaPredicted RBP17.55■□□□□ 0.4
SS18-215ENST00000580642 TANGO6Q9C0B7 1094 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 SLC38A10Q9HBR0 1119 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 SLC45A1Q9Y2W3 748 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 OTOFQ9HC10 1997 aa17.55■□□□□ 0.4
SS18-215ENST00000580642 ATP2A1O14983 1001 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 ZBED4O75132 1171 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 FLOT1O75955 427 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 TRAPPC10P48553 1259 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 GTF2A2P52657 109 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 KRT85P78386 507 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 NPY5RQ15761 445 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 OTUD7BQ6GQQ9 843 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 BLIDQ8IZY5 108 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 MB21D1Q8N884 522 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 KIFC2Q96AC6 838 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 HHIPL1Q96JK4 782 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 SCAND2PQ9GZW5 306 aaPredicted RBP17.54■□□□□ 0.4
SS18-215ENST00000580642 KCNJ14Q9UNX9 436 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 PCDHA1Q9Y5I3 950 aa17.54■□□□□ 0.4
SS18-215ENST00000580642 ABCB11O95342 1321 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 SMCO2A6NFE2 343 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 DDX11L8A8MPP1 907 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 ICAM1P05362 532 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 CETPP11597 493 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 DSG3P32926 999 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 RILPL1Q5EBL4 403 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 LBX2Q6XYB7 198 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 FERMT3Q86UX7 667 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 GTF3C2Q8WUA4 911 aaPredicted RBP17.53■□□□□ 0.4
SS18-215ENST00000580642 PIBF1Q8WXW3 757 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 GPKOWQ92917 476 aaPredicted RBP eCLIP17.53■□□□□ 0.4
SS18-215ENST00000580642 WNK4Q96J92 1243 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 RIC8AQ9NPQ8 531 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 GJB4Q9NTQ9 266 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 AGTPBP1Q9UPW5 1226 aa17.53■□□□□ 0.4
SS18-215ENST00000580642 BTBD18B2RXH4 712 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 M0R2N6 131 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 PPP1R11O60927 126 aaPredicted RBP17.52■□□□□ 0.4
SS18-215ENST00000580642 ADCY7P51828 1080 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 MYSM1Q5VVJ2 828 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 TYW1BQ6NUM6 668 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 CUL5Q93034 780 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 TNFRSF25Q93038 417 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 SHISA4Q96DD7 197 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 FBXO28Q9NVF7 368 aa17.52■□□□□ 0.4
SS18-215ENST00000580642 MAP3K20Q9NYL2 800 aaKnown RBP17.52■□□□□ 0.4
SS18-215ENST00000580642 MRPL11Q9Y3B7 192 aaKnown RBP17.52■□□□□ 0.4
SS18-215ENST00000580642 MORC2Q9Y6X9 1032 aaPredicted RBP17.52■□□□□ 0.4
SS18-215ENST00000580642 MYH6P13533 1939 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 VWA5AO00534 786 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 HUNKP57058 714 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 TKFCQ3LXA3 575 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 FOXD4L5Q5VV16 416 aaPredicted RBP17.51■□□□□ 0.39
SS18-215ENST00000580642 SPRYD7Q5W111 196 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 KRT25Q7Z3Z0 450 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 TMEM87AQ8NBN3 555 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 CNKSR2Q8WXI2 1034 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 FOXD4L4Q8WXT5 416 aaPredicted RBP17.51■□□□□ 0.39
SS18-215ENST00000580642 PSTPIP2Q9H939 334 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 PNMA3Q9UL41 463 aa17.51■□□□□ 0.39
SS18-215ENST00000580642 NOL7Q9UMY1 257 aaKnown RBP17.51■□□□□ 0.39
SS18-215ENST00000580642 CTDP1Q9Y5B0 961 aaPredicted RBP17.51■□□□□ 0.39
SS18-215ENST00000580642 ELP1O95163 1332 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 KIF28PB7ZC32 967 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 PIK3CDO00329 1044 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 BMP15O95972 392 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 FOSP01100 380 aaPredicted RBP17.5■□□□□ 0.39
SS18-215ENST00000580642 OSBPP22059 807 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 MCM4P33991 863 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 FOSBP53539 338 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 GHRHRQ02643 423 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 FMR1Q06787 632 aaKnown RBP eCLIP17.5■□□□□ 0.39
SS18-215ENST00000580642 AP3B2Q13367 1082 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 MOGSQ13724 837 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 SAPCD2Q86UD0 394 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 REXO1Q8N1G1 1221 aaKnown RBP17.5■□□□□ 0.39
SS18-215ENST00000580642 COA7Q96BR5 231 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 ZCCHC17Q9NP64 241 aaKnown RBP17.5■□□□□ 0.39
SS18-215ENST00000580642 POLR3EQ9NVU0 708 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 LOC285556D6RIA3 1793 aa17.5■□□□□ 0.39
SS18-215ENST00000580642 TESPA1A2RU30 521 aaPredicted RBP17.49■□□□□ 0.39
SS18-215ENST00000580642 YEATS4O95619 227 aa17.49■□□□□ 0.39
SS18-215ENST00000580642 INHBEP58166 350 aa17.49■□□□□ 0.39
SS18-215ENST00000580642 DNM1Q05193 864 aaKnown RBP17.49■□□□□ 0.39
SS18-215ENST00000580642 ORC2Q13416 577 aaPredicted RBP17.49■□□□□ 0.39
SS18-215ENST00000580642 GADL1Q6ZQY3 521 aa17.49■□□□□ 0.39
SS18-215ENST00000580642 MCF2L2Q86YR7 1114 aa17.49■□□□□ 0.39
SS18-215ENST00000580642 CCDC102AQ96A19 550 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms