RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 CCDC96Q2M329 555 aa32.44■■■□□ 2.78
CTDNEP1-210ENST00000574322 ARL6IP4Q66PJ3 421 aaKnown RBP32.44■■■□□ 2.78
CTDNEP1-210ENST00000574322 CSRNP2Q9H175 543 aa32.44■■■□□ 2.78
CTDNEP1-210ENST00000574322 VEZTQ9HBM0 779 aa32.44■■■□□ 2.78
CTDNEP1-210ENST00000574322 GPBP1L1Q9HC44 474 aaPredicted RBP32.44■■■□□ 2.78
CTDNEP1-210ENST00000574322 NBPF9Q3BBW0 867 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 TTBK2Q6IQ55 1244 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 ANO10Q9NW15 660 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 KRBA2Q6ZNG9 492 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 C4orf32Q8N8J7 132 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 RASGRP4Q8TDF6 673 aa32.43■■■□□ 2.78
CTDNEP1-210ENST00000574322 SCN4AP35499 1836 aa32.42■■■□□ 2.78
CTDNEP1-210ENST00000574322 ZBTB5O15062 677 aa32.42■■■□□ 2.78
CTDNEP1-210ENST00000574322 SLC1A4P43007 532 aa32.42■■■□□ 2.78
CTDNEP1-210ENST00000574322 USP50Q70EL3 339 aaPredicted RBP32.42■■■□□ 2.78
CTDNEP1-210ENST00000574322 CBX8Q9HC52 389 aa32.42■■■□□ 2.78
CTDNEP1-210ENST00000574322 F5H6K3 240 aa32.41■■■□□ 2.78
CTDNEP1-210ENST00000574322 KLRC3Q07444 240 aa32.41■■■□□ 2.78
CTDNEP1-210ENST00000574322 KCTD1Q719H9 257 aa32.41■■■□□ 2.78
CTDNEP1-210ENST00000574322 TMEM39BQ9GZU3 492 aa32.41■■■□□ 2.78
CTDNEP1-210ENST00000574322 TNNI2P48788 182 aa32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 HIRAP54198 1017 aaPredicted RBP32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 PNMA8AQ86V59 439 aaPredicted RBP32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 TUBE1Q9UJT0 475 aa32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 ZNF165P49910 485 aa32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 LONRF3Q496Y0 759 aa32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 EAPPQ56P03 285 aaPredicted RBP32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 DNAJC25Q9H1X3 360 aa32.4■■■□□ 2.78
CTDNEP1-210ENST00000574322 SPECC1Q5M775 1068 aa32.39■■■□□ 2.78
CTDNEP1-210ENST00000574322 MCM7P33993 719 aa32.38■■■□□ 2.77
CTDNEP1-210ENST00000574322 ORC2Q13416 577 aaPredicted RBP32.38■■■□□ 2.77
CTDNEP1-210ENST00000574322 NONOQ15233 471 aaKnown RBP eCLIP32.38■■■□□ 2.77
CTDNEP1-210ENST00000574322 REXO1Q8N1G1 1221 aaKnown RBP32.38■■■□□ 2.77
CTDNEP1-210ENST00000574322 USP17L10C9JJH3 530 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 LAD1O00515 517 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 PPP1R11O60927 126 aaPredicted RBP32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 NDUFB10O96000 172 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 SLC16A2P36021 539 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 ADCY7P51828 1080 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 MDM2Q00987 491 aaPredicted RBP32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 TNFAIP1Q13829 316 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 INF2Q27J81 1249 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 BTNL9Q6UXG8 535 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 CNNM3Q8NE01 707 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 COA7Q96BR5 231 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 RIC8AQ9NPQ8 531 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 ZBTB21Q9ULJ3 1066 aa32.37■■■□□ 2.77
CTDNEP1-210ENST00000574322 KANK3Q6NY19 840 aa32.36■■■□□ 2.77
CTDNEP1-210ENST00000574322 ARHGEF10LQ9HCE6 1279 aa32.36■■■□□ 2.77
CTDNEP1-210ENST00000574322 HOOK1Q9UJC3 728 aaKnown RBP32.36■■■□□ 2.77
CTDNEP1-210ENST00000574322 TMX2Q9Y320 296 aa32.36■■■□□ 2.77
CTDNEP1-210ENST00000574322 A0A1W2PRG0 241 aa32.35■■■□□ 2.77
CTDNEP1-210ENST00000574322 IQCB1Q15051 598 aa32.35■■■□□ 2.77
CTDNEP1-210ENST00000574322 USP49Q70CQ1 688 aa32.35■■■□□ 2.77
CTDNEP1-210ENST00000574322 LUZP1Q86V48 1076 aa32.35■■■□□ 2.77
CTDNEP1-210ENST00000574322 USP25Q9UHP3 1055 aa32.35■■■□□ 2.77
CTDNEP1-210ENST00000574322 POLR2DO15514 142 aaKnown RBP32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 PRPHP41219 470 aa32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 HS1BP3Q53T59 392 aa32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 C11orf57Q6ZUT1 292 aaPredicted RBP32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 CDAN1Q8IWY9 1227 aa32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 ASTN2O75129 1339 aaPredicted RBP32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 LONP1P36776 959 aaKnown RBP32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 CAP2P40123 477 aa32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 ERCC4Q92889 916 aaPredicted RBP32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 GLT8D2Q9H1C3 349 aa32.34■■■□□ 2.77
CTDNEP1-210ENST00000574322 ACTN4O43707 911 aaKnown RBP32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 BMP3P12645 472 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 NLRP12P59046 1061 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 RASA3Q14644 834 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 IL17AQ16552 155 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 NEK8Q86SG6 692 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 CEP57L1Q8IYX8 460 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 ZNF784Q8NCA9 323 aaPredicted RBP32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 SYMPKQ92797 1274 aaKnown RBP32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 EPSTI1Q96J88 318 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 TEPSINQ96N21 525 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 BPIFA3Q9BQP9 254 aa32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 NAT10Q9H0A0 1025 aaKnown RBP32.33■■■□□ 2.77
CTDNEP1-210ENST00000574322 VWA3AA6NCI4 1184 aa32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 CLK2P49760 499 aaKnown RBP32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 TRIM44Q96DX7 344 aaPredicted RBP32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 PYM1Q9BRP8 204 aaKnown RBP32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 GGA3Q9NZ52 723 aa32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 CLEC11AQ9Y240 323 aa32.32■■■□□ 2.76
CTDNEP1-210ENST00000574322 ZRSR1Q15695 479 aaKnown RBP32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 QRICH1Q2TAL8 776 aa32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 ANGEL2Q5VTE6 544 aaKnown RBP32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 POTEIP0CG38 1075 aa32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 POTEJP0CG39 1038 aa32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 MRPL12P52815 198 aaKnown RBP32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 ZC3H15Q8WU90 426 aaKnown RBP32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 BIN2Q9UBW5 565 aaPredicted RBP32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 SERTAD1Q9UHV2 236 aa32.31■■■□□ 2.76
CTDNEP1-210ENST00000574322 CDC37Q16543 378 aaPredicted RBP32.3■■■□□ 2.76
CTDNEP1-210ENST00000574322 NT5DC1Q5TFE4 455 aa32.3■■■□□ 2.76
CTDNEP1-210ENST00000574322 CUL5Q93034 780 aa32.3■■■□□ 2.76
CTDNEP1-210ENST00000574322 ADCY5O95622 1261 aa32.29■■■□□ 2.76
CTDNEP1-210ENST00000574322 SLFN14P0C7P3 912 aa32.29■■■□□ 2.76
CTDNEP1-210ENST00000574322 PNOCQ13519 176 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms