RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TSEN34Q9BSV6 310 aaKnown RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 UPF3AQ9H1J1 476 aaKnown RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 TTYH1Q9H313 450 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 PRDM5Q9NQX1 630 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 FEM1BQ9UK73 627 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 DDX49Q9Y6V7 483 aaKnown RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 SCN5AQ14524 2016 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 CHD9Q3L8U1 2897 aa8□□□□□ -1.13
VPS53-213ENST00000572334 C11orf97A0A1B0GVM6 126 aaPredicted RBP8□□□□□ -1.13
VPS53-213ENST00000572334 SOWAHBA6NEL2 793 aa8□□□□□ -1.13
VPS53-213ENST00000572334 NMT2O60551 498 aa8□□□□□ -1.13
VPS53-213ENST00000572334 DUSP11O75319 330 aaKnown RBP8□□□□□ -1.13
VPS53-213ENST00000572334 APPP05067 770 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CLTBP09497 229 aa8□□□□□ -1.13
VPS53-213ENST00000572334 FGRP09769 529 aa8□□□□□ -1.13
VPS53-213ENST00000572334 BMP3P12645 472 aa8□□□□□ -1.13
VPS53-213ENST00000572334 MX1P20591 662 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CST5P28325 142 aaPredicted RBP8□□□□□ -1.13
VPS53-213ENST00000572334 CDK7P50613 346 aa8□□□□□ -1.13
VPS53-213ENST00000572334 ACLYP53396 1101 aa8□□□□□ -1.13
VPS53-213ENST00000572334 NKX3-2P78367 333 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TFAP4Q01664 338 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CNTN2Q02246 1040 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CTDSPL2Q05D32 466 aa8□□□□□ -1.13
VPS53-213ENST00000572334 ACVR2BQ13705 512 aa8□□□□□ -1.13
VPS53-213ENST00000572334 KCNA10Q16322 511 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CCDC144BQ3MJ40 725 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TMEM63BQ5T3F8 832 aa8□□□□□ -1.13
VPS53-213ENST00000572334 RNF180Q86T96 592 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CHST13Q8NET6 341 aa8□□□□□ -1.13
VPS53-213ENST00000572334 SP7Q8TDD2 431 aaPredicted RBP8□□□□□ -1.13
VPS53-213ENST00000572334 GPATCH3Q96I76 525 aa8□□□□□ -1.13
VPS53-213ENST00000572334 GMCL1Q96IK5 515 aa8□□□□□ -1.13
VPS53-213ENST00000572334 AGBL1Q96MI9 1066 aa8□□□□□ -1.13
VPS53-213ENST00000572334 FAM161BQ96MY7 647 aa8□□□□□ -1.13
VPS53-213ENST00000572334 A1CFQ9NQ94 594 aaKnown RBP8□□□□□ -1.13
VPS53-213ENST00000572334 ANAPC4Q9UJX5 808 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TBX21Q9UL17 535 aa8□□□□□ -1.13
VPS53-213ENST00000572334 FAM184BQ9ULE4 1060 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TRIP12Q14669 1992 aaPredicted RBP8□□□□□ -1.13
VPS53-213ENST00000572334 SCN10AQ9Y5Y9 1956 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TET1Q8NFU7 2136 aa8□□□□□ -1.13
VPS53-213ENST00000572334 CHD7Q9P2D1 2997 aa8□□□□□ -1.13
VPS53-213ENST00000572334 NCOR1O75376 2440 aa8□□□□□ -1.13
VPS53-213ENST00000572334 TMEM232C9JQI7 657 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 ERC2O15083 957 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 PLA2G6O60733 806 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 PQBP1O60828 265 aaKnown RBP7.99□□□□□ -1.13
VPS53-213ENST00000572334 ZBED4O75132 1171 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 TSPY3P0CV98 308 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 TSPY8P0CW00 308 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 MCCP23508 829 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 SLC4A3P48751 1232 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 RRP1P56182 461 aaKnown RBP7.99□□□□□ -1.13
VPS53-213ENST00000572334 GJA9P57773 515 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 SNAP25P60880 206 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 PDE4BQ07343 736 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 MUM1L1Q5H9M0 696 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 KCTD1Q719H9 257 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 C16orf59Q7L2K0 433 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 ARMCX2Q7L311 632 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 CCDC144CPQ8IYA2 1237 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 STAG1Q8WVM7 1258 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 CHMP4CQ96CF2 233 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 DDX11Q96FC9 970 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 TOX2Q96NM4 488 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 CRBNQ96SW2 442 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 FSD1Q9BTV5 496 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 NAPBQ9H115 298 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 SEMA6BQ9H3T3 888 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 PRKAG2Q9UGJ0 569 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 ZHX1Q9UKY1 873 aaPredicted RBP7.99□□□□□ -1.13
VPS53-213ENST00000572334 CNPY2Q9Y2B0 182 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 KIAA1217Q5T5P2 1943 aa7.99□□□□□ -1.13
VPS53-213ENST00000572334 MYH7BA7E2Y1 1941 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 PTPRSQ13332 1948 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 REV3LO60673 3130 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 A0A0D9SFI3 127 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 MOXD2PA6NHM9 499 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ORC4O43929 436 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ABCB7O75027 752 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ASGR1P07306 291 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 PRKCSHP14314 528 aaPredicted RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 STAT2P52630 851 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 PDE1AP54750 535 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 SMAD3P84022 425 aaKnown RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 ALX1Q15699 326 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 TTBK2Q6IQ55 1244 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ZNF589Q86UQ0 364 aaPredicted RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 FAM126BQ8IXS8 530 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ANKRD35Q8N283 1001 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 VWCEQ96DN2 955 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 FAM227BQ96M60 508 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 PURBQ96QR8 312 aaKnown RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 CDX2Q99626 313 aaPredicted RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 NACAP1Q9BZK3 213 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ABHD16BQ9H3Z7 469 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ACAD9Q9H845 621 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ZNF287Q9HBT7 754 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms