RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NAPGQ99747 312 aaPredicted RBP14.89□□□□□ -0.03
CLK3-206ENST00000562078 NRXN2Q9P2S2 1712 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 MAST2Q6P0Q8 1798 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 A0A1B0GUA9 196 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 CYP7A1P22680 504 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 KLRK1P26718 216 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 GCKP35557 465 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 PNOCQ13519 176 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 GRAPQ13588 217 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 TUBB2AQ13885 445 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 NAA25Q14CX7 972 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 OTUD7BQ6GQQ9 843 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 B4GALNT4Q76KP1 1039 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 GRAPLQ8TC17 118 aaPredicted RBP14.88□□□□□ -0.03
CLK3-206ENST00000562078 TUBB2BQ9BVA1 445 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 KIF9Q9HAQ2 790 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 ATXN2Q99700 1313 aaKnown RBP14.88□□□□□ -0.03
CLK3-206ENST00000562078 GOLGA6BA6NDN3 693 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 POLR3DP05423 398 aaPredicted RBP14.88□□□□□ -0.03
CLK3-206ENST00000562078 CDC27P30260 824 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 SMTNP53814 917 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 USP14P54578 494 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 PDE4BQ07343 736 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 PDCLQ13371 301 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 E2F5Q15329 346 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 ZKSCAN8Q15776 578 aaPredicted RBP14.88□□□□□ -0.03
CLK3-206ENST00000562078 CAVIN4Q5BKX8 364 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 RNF187Q5TA31 235 aaPredicted RBP14.88□□□□□ -0.03
CLK3-206ENST00000562078 AP1ARQ63HQ0 302 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 APOA5Q6Q788 366 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 C8orf76Q96K31 380 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 SELENOOQ9BVL4 669 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 TACC3Q9Y6A5 838 aa14.88□□□□□ -0.03
CLK3-206ENST00000562078 AP1G2O75843 785 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 SSBP05455 408 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLK3-206ENST00000562078 RPSAP08865 295 aaKnown RBP14.87□□□□□ -0.03
CLK3-206ENST00000562078 GNAT2P19087 354 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 SSR1P43307 286 aaKnown RBP14.87□□□□□ -0.03
CLK3-206ENST00000562078 ADCY2Q08462 1091 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 FAM228AQ86W67 206 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 MICU3Q86XE3 530 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 CCDC13Q8IYE1 715 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 NACAP1Q9BZK3 213 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 VCPKMTQ9H867 229 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 SLC40A1Q9NP59 571 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 ETAA1Q9NY74 926 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 ZBTB12Q9Y330 459 aaPredicted RBP14.87□□□□□ -0.03
CLK3-206ENST00000562078 LAMB1P07942 1786 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 MROH7-TTC4A0A0A0MT08 1334 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 ARHGAP25P42331 645 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 METAP2P50579 478 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLK3-206ENST00000562078 TMEM67Q5HYA8 995 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 AKNAD1Q5T1N1 836 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 STK11IPQ8N1F8 1099 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 ARMC2Q8NEN0 867 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 CPLX3Q8WVH0 158 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 RBM17Q96I25 401 aaKnown RBP14.87□□□□□ -0.03
CLK3-206ENST00000562078 SH3GL2Q99962 352 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 HINFPQ9BQA5 517 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 ANKRD2Q9GZV1 360 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 POLD4Q9HCU8 107 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 GJB4Q9NTQ9 266 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 TUBE1Q9UJT0 475 aa14.87□□□□□ -0.03
CLK3-206ENST00000562078 SPTLC2O15270 562 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 PPP1R12BO60237 982 aaPredicted RBP14.86□□□□□ -0.03
CLK3-206ENST00000562078 PEX19P40855 299 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 RRP12Q5JTH9 1297 aaKnown RBP14.86□□□□□ -0.03
CLK3-206ENST00000562078 TLDC1Q6P9B6 456 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 NFXL1Q6ZNB6 911 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 ACRBPQ8NEB7 543 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 TMEM87BQ96K49 555 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 FAM84BQ96KN1 310 aaPredicted RBP14.86□□□□□ -0.03
CLK3-206ENST00000562078 MYL10Q9BUA6 226 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 LY9Q9HBG7 655 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 MYO6Q9UM54 1294 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 CRY2Q49AN0 593 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 IGDCC4Q8TDY8 1250 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 PARD3BQ8TEW8 1205 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 ZNF526Q8TF50 670 aaPredicted RBP14.86□□□□□ -0.03
CLK3-206ENST00000562078 SDR42E1Q8WUS8 393 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 SCLT1Q96NL6 688 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 ZSWIM5Q9P217 1185 aa14.86□□□□□ -0.03
CLK3-206ENST00000562078 AKR1B15C9JRZ8 316 aaPredicted RBP14.85□□□□□ -0.03
CLK3-206ENST00000562078 AMPD2Q01433 879 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 SNCBQ16143 134 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 NBPF9Q3BBW0 867 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 OLFM4Q6UX06 510 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 MFSD6Q6ZSS7 791 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 KCNG4Q8TDN1 519 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 THOC1Q96FV9 657 aaKnown RBP14.85□□□□□ -0.03
CLK3-206ENST00000562078 CNNM2Q9H8M5 875 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 SPATS2LQ9NUQ6 558 aaKnown RBP14.85□□□□□ -0.03
CLK3-206ENST00000562078 MAGEB6P1A0A0J9YX57 407 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 ZBTB43O43298 467 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 CDR1P51861 262 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 BRIP1Q9BX63 1249 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 ANKIB1Q9P2G1 1089 aa14.85□□□□□ -0.03
CLK3-206ENST00000562078 KIAA1551Q9HCM1 1747 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 IFIT3O14879 490 aaKnown RBP14.84□□□□□ -0.03
CLK3-206ENST00000562078 ZEB2O60315 1214 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms