RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 HEATR3Q7Z4Q2 680 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 HNRNPLLQ8WVV9 542 aaKnown RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 DYNLL2Q96FJ2 89 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 IRX2Q9BZI1 471 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 ZMYND12Q9H0C1 365 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 MAGEC2Q9UBF1 373 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 IRF2BP1Q8IU81 584 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 MSANTD4Q8NCY6 345 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 ACRBPQ8NEB7 543 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 RASGRP4Q8TDF6 673 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 DNAJC7Q99615 494 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 TMEM47Q9BQJ4 181 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 TMEM60Q9H2L4 133 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 USP17L3A6NCW0 530 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 USP17L4A6NCW7 530 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 NUTM2BA6NNL0 878 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-222ENST00000555774 NUTM2EB1AL46 878 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-222ENST00000555774 CYTH3O43739 400 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 SEC31AO94979 1220 aaKnown RBP15.16■□□□□ 0.02
SHMT2-222ENST00000555774 RASA1P20936 1047 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 ARHGAP25P42331 645 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 PIP4K2BP78356 416 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 INF2Q27J81 1249 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 SLC35G1Q2M3R5 365 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF662Q6ZS27 426 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 USP17L1Q7RTZ2 530 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 SLC35F6Q8N357 371 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 OR8K1Q8NGG5 319 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF507Q8TCN5 953 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 ANKIB1Q9P2G1 1089 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 RAB21Q9UL25 225 aa15.16■□□□□ 0.02
SHMT2-222ENST00000555774 TNRC6CQ9HCJ0 1690 aaKnown RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 SBF2Q86WG5 1849 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 BICDL2A1A5D9 508 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 OR52Z1P0C646 297 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 GNA11P29992 359 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 DNM2P50570 870 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 VPS72Q15906 364 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 FAM98CQ17RN3 349 aaKnown RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 COBLL1Q53SF7 1204 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 FAM114A1Q8IWE2 563 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 MSL3Q8N5Y2 521 aaKnown RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 RETREG2Q8NC44 543 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 NUP58Q9BVL2 599 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 CAPN11Q9UMQ6 739 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 CCDC66A2RUB6 948 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 COBLO75128 1261 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 HOXA7P31268 230 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 NONOQ15233 471 aaKnown RBP eCLIP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 TSR1Q2NL82 804 aaKnown RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 C16orf86Q6ZW13 317 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 TRIM47Q96LD4 638 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 RTFDC1Q9BY42 306 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 C6orf50Q9HD87 102 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 ST7Q9NRC1 585 aa15.15■□□□□ 0.02
SHMT2-222ENST00000555774 LUC7L2Q9Y383 392 aaKnown RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 EPN1Q9Y6I3 576 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-222ENST00000555774 FLT1P17948 1338 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 hCG_1984214I3L0E3 225 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 NDUFA10O95299 355 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 PLCG2P16885 1265 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 CDC25AP30304 524 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 KCNQ4P56696 695 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 TTI2Q6NXR4 508 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 CABP7Q86V35 215 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 ZNF713Q8N859 430 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-222ENST00000555774 NEDD1Q8NHV4 660 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 TGFBRAP1Q8WUH2 860 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 IQCDQ96DY2 449 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 C7orf25Q9BPX7 421 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 EPC1Q9H2F5 836 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 HAUS4Q9H6D7 363 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 JAG2Q9Y219 1238 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 SNED1Q8TER0 1413 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 NHSQ6T4R5 1651 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 A0A0U1RQJ8 604 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 ESYT2A0FGR8 921 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 RNF225M0QZC1 329 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-222ENST00000555774 ERLIN1O75477 346 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 SASH3O75995 380 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 SRGNP10124 158 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 NAPAP54920 295 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 AMPD3Q01432 767 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 ATRIPQ8WXE1 791 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 ARHGEF1Q92888 912 aaKnown RBP15.14■□□□□ 0.01
SHMT2-222ENST00000555774 FUT8Q9BYC5 575 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 STX8Q9UNK0 236 aa15.14■□□□□ 0.01
SHMT2-222ENST00000555774 TTC26A0AVF1 554 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 TRIM49BA6NDI0 452 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 PP2D1A8MPX8 630 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 CCNE1P24864 410 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 EHBP1Q8NDI1 1231 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 RRP36Q96EU6 259 aaKnown RBP15.13■□□□□ 0.01
SHMT2-222ENST00000555774 GBP3Q9H0R5 595 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 ANKZF1Q9H8Y5 726 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 CCNL1Q9UK58 526 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-222ENST00000555774 MAPK8IP1Q9UQF2 711 aa15.13■□□□□ 0.01
SHMT2-222ENST00000555774 DDX60LQ5H9U9 1706 aaKnown RBP15.13■□□□□ 0.01
SHMT2-222ENST00000555774 GPR75-ASB3A0A0A6YYF3 556 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms