RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 USP17L21D6R901 530 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 DTHD1Q6ZMT9 781 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 SMARCC1Q92922 1105 aaPredicted RBP19.64■□□□□ 0.73
SYNE3-202ENST00000553340 EIF3CQ99613 913 aaKnown RBP19.64■□□□□ 0.73
SYNE3-202ENST00000553340 NHEJ1Q9H9Q4 299 aaPredicted RBP19.64■□□□□ 0.73
SYNE3-202ENST00000553340 NAALADL2Q58DX5 795 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 TUBGCP2Q9BSJ2 902 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 AGPAT5Q9NUQ2 364 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 ZC3H4Q9UPT8 1303 aaKnown RBP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 ADAMTS3O15072 1205 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 ORC4O43929 436 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 NMT2O60551 498 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 RHOBTB3O94955 611 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 VEGFAP15692 232 aaPredicted RBP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 GYG1P46976 350 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 CCDC70Q6NSX1 233 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 CCNI2Q6ZMN8 369 aaPredicted RBP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 GIMAP8Q8ND71 665 aaPredicted RBP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 TTYH3Q9C0H2 523 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 LACRTQ9GZZ8 138 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 CICQ96RK0 1608 aaPredicted RBP19.63■□□□□ 0.73
SYNE3-202ENST00000553340 ZMYND10O75800 440 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 IDEP14735 1019 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 KIF5BP33176 963 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 ZBED6P86452 979 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 TTI2Q6NXR4 508 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 SELENOOQ9BVL4 669 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 JADE2Q9NQC1 790 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 KAT6BQ8WYB5 2073 aa19.63■□□□□ 0.73
SYNE3-202ENST00000553340 KLRC4O43908 158 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 GGCXP38435 758 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 UBA7P41226 1012 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 TBC1D8BQ0IIM8 1120 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 CSGALNACT2Q8N6G5 542 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 DHTKD1Q96HY7 919 aaPredicted RBP19.62■□□□□ 0.73
SYNE3-202ENST00000553340 GDAP1L1Q96MZ0 367 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 RCCD1A6NED2 376 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 CORO7P57737 925 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 KIF5AQ12840 1032 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 PARP10Q53GL7 1025 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 CACNA1SQ13698 1873 aa19.62■□□□□ 0.73
SYNE3-202ENST00000553340 FAM47AQ5JRC9 791 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 RIN2Q8WYP3 895 aaPredicted RBP19.61■□□□□ 0.73
SYNE3-202ENST00000553340 SH3GLB2Q9NR46 395 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 KBTBD4Q9NVX7 518 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 PCDHA4Q9UN74 947 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 ZNF185O15231 689 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 SECISBP2LQ93073 1101 aaKnown RBP19.61■□□□□ 0.73
SYNE3-202ENST00000553340 PCMTD1Q96MG8 357 aaPredicted RBP19.61■□□□□ 0.73
SYNE3-202ENST00000553340 PURBQ96QR8 312 aaKnown RBP19.61■□□□□ 0.73
SYNE3-202ENST00000553340 TSGA10Q9BZW7 698 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 FAM205AQ6ZU69 1335 aa19.61■□□□□ 0.73
SYNE3-202ENST00000553340 CCDC194A0A1B0GVG4 234 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 MACROD2A1Z1Q3 448 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 PDE2AO00408 941 aaPredicted RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 FAM114A1Q8IWE2 563 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 FNBP4Q8N3X1 1017 aaPredicted RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 CCSER1Q9C0I3 900 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 BICDL2A1A5D9 508 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 NUTM2BA6NNL0 878 aaPredicted RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 PP2D1A8MPX8 630 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 NUTM2EB1AL46 878 aaPredicted RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 MYBL2P10244 700 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 VAV2P52735 878 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 CDK17Q00537 523 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 CAVIN4Q5BKX8 364 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 DNAJC21Q5F1R6 531 aaKnown RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 GSPT2Q8IYD1 628 aaKnown RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 FAM76AQ8TAV0 307 aa19.6■□□□□ 0.73
SYNE3-202ENST00000553340 CCDC47Q96A33 483 aaKnown RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 DUSP9Q99956 384 aaKnown RBP19.6■□□□□ 0.73
SYNE3-202ENST00000553340 GOLGA6BA6NDN3 693 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 SPA17Q15506 151 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 PPM1EQ8WY54 764 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 PLEKHA4Q9H4M7 779 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 FAM184BQ9ULE4 1060 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 DUSP10Q9Y6W6 482 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 COL1A1P02452 1464 aaPredicted RBP19.59■□□□□ 0.73
SYNE3-202ENST00000553340 RASSF10A6NK89 507 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 AGPSO00116 658 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 NOP2P46087 812 aaKnown RBP19.59■□□□□ 0.73
SYNE3-202ENST00000553340 CYP27A1Q02318 531 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 C2orf54Q08AI8 447 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 TTC31Q49AM3 519 aaPredicted RBP19.59■□□□□ 0.73
SYNE3-202ENST00000553340 AMOTL1Q8IY63 956 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 P2RX5Q93086 422 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 PLIN2Q99541 437 aa19.59■□□□□ 0.73
SYNE3-202ENST00000553340 TSPY2A6NKD2 308 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 CCNE1P24864 410 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 MTIF2P46199 727 aaKnown RBP19.58■□□□□ 0.73
SYNE3-202ENST00000553340 KLK7P49862 253 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 UBE4AQ14139 1066 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 TRIM58Q8NG06 486 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 RASGRP4Q8TDF6 673 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 GPKOWQ92917 476 aaPredicted RBP eCLIP19.58■□□□□ 0.73
SYNE3-202ENST00000553340 CNOT6LQ96LI5 555 aaKnown RBP19.58■□□□□ 0.73
SYNE3-202ENST00000553340 CCDC42Q96M95 316 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 JRKLQ9Y4A0 524 aa19.58■□□□□ 0.73
SYNE3-202ENST00000553340 GOLGA6CA6NDK9 693 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms