RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RIC8AQ9NPQ8 531 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 EIF2B4Q9UI10 523 aaKnown RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 GOLGA8MH3BSY2 632 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 MYL6BP14649 208 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 AKAP17AQ02040 695 aaKnown RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 SH3BP5LQ7L8J4 393 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 FAM107BQ9H098 131 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 AATKQ6ZMQ8 1374 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 GTPBP10A4D1E9 387 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 RHOXF2BP0C7M4 288 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 GNAT1P11488 350 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 ANXA13P27216 316 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SCNN1AP37088 669 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 BASP1P80723 227 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 PLCB4Q15147 1175 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SF3B3Q15393 1217 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 CRY1Q16526 586 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SPATS2Q86XZ4 545 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 RABGGTAQ92696 567 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 ZNF496Q96IT1 587 aaPredicted RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 RHOXF2Q9BQY4 288 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 VPS33BQ9H267 617 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 GALNT8Q9NY28 637 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 USP32Q8NFA0 1604 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 EVC2Q86UK5 1308 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 ZW10O43264 779 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 BPNT1O95861 308 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SERPINC1P01008 464 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SSBP05455 408 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 PRLRP16471 622 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 TSPAN7P41732 249 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 EVCP57679 992 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 MRPS5P82675 430 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 CNGA3Q16281 694 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 TMEM53Q6P2H8 277 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 SGCDQ92629 289 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 KCNN1Q92952 543 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 PCSK1NQ9UHG2 260 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 TSC22D4Q9Y3Q8 395 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 UGGT1Q9NYU2 1555 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 TROVE2P10155 538 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 HSPA1LP34931 641 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 ADCY8P40145 1251 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 LETM2Q2VYF4 491 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 BICDL1Q6ZP65 573 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 RNPC3Q96LT9 517 aaKnown RBP9.84□□□□□ -0.83
VPS13D-212ENST00000543766 UBXN6Q9BZV1 441 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 DNAJC25Q9H1X3 360 aa9.84□□□□□ -0.83
VPS13D-212ENST00000543766 TRIM43BA6NCK2 446 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 DIAPH2O60879 1101 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 STAMBPO95630 424 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 POU5F1BQ06416 359 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 NBPF14Q5TI25 921 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ISM2Q6H9L7 571 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 TRPV5Q9NQA5 729 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ZBTB40Q9NUA8 1239 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 MRPS23Q9Y3D9 190 aaKnown RBP9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ZEB2O60315 1214 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 TADA3O75528 432 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 MLH1P40692 756 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 TMF1P82094 1093 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 NFIAQ12857 509 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 EMC10Q5UCC4 262 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 DGLUCYQ7Z3D6 616 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC25Q86WR0 208 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 TMEM87AQ8NBN3 555 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ZNF180Q9UJW8 692 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 A0A1B0GVG6 124 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 FAM25EA8MYX2 175 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 MGEA5O60502 916 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ZMYND10O75800 440 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 MCM3P25205 808 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 SCNN1DP51172 638 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 PMS2P54278 862 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ANKRD1Q15327 319 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 C6orf183Q5T699 404 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 DNAJB7Q7Z6W7 309 aaPredicted RBP9.83□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC63Q8NA47 563 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 ANKK1Q8NFD2 765 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 SATB2Q9UPW6 733 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 EID1Q9Y6B2 187 aa9.83□□□□□ -0.84
VPS13D-212ENST00000543766 STRCP1A6NGW2 1772 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ABL1P00519 1130 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CLTAP09496 248 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 TNFAIP3P21580 790 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 SOX11P35716 441 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CTCFP49711 727 aaPredicted RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 MARSP56192 900 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ELF2Q15723 593 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 BPHLQ86WA6 291 aaPredicted RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 GRAMD2AQ8IUY3 354 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 MFN1Q8IWA4 741 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 RNF10Q8N5U6 811 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 OSBPL9Q96SU4 736 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 SMAD5Q99717 465 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 THUMPD2Q9BTF0 503 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 LUC7LQ9NQ29 371 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 TPCN1Q9ULQ1 816 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CAPN7Q9Y6W3 813 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms