RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 IFFO2Q5TF58 517 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 NFXL1Q6ZNB6 911 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 RAB11FIP4Q86YS3 637 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 PXYLP1Q8TE99 480 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 NUP133Q8WUM0 1156 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 MMP19Q99542 508 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 APBA2Q99767 749 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 FLRT1Q9NZU1 646 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 GTF3C3Q9Y5Q9 886 aa15.61■□□□□ 0.09
VPS28-210ENST00000529182 EPB41L2O43491 1005 aaKnown RBP15.6■□□□□ 0.09
VPS28-210ENST00000529182 SEC24BO95487 1268 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 PGK2P07205 417 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 FCER1AP12319 257 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 XRCC5P13010 732 aaKnown RBP15.6■□□□□ 0.09
VPS28-210ENST00000529182 ALAS1P13196 640 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 RXRAP19793 462 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 COPB2P35606 906 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 GRM4Q14833 912 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 DHX32Q7L7V1 743 aaKnown RBP15.6■□□□□ 0.09
VPS28-210ENST00000529182 CATIPQ7Z7H3 387 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 DPP9Q86TI2 863 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 ADGRF4Q8IZF3 695 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 ZNF654Q8IZM8 581 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 MTA3Q9BTC8 594 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 VAT1LQ9HCJ6 419 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 RNF146Q9NTX7 359 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 CCPG1Q9ULG6 757 aa15.6■□□□□ 0.09
VPS28-210ENST00000529182 PALM3A6NDB9 673 aaPredicted RBP15.59■□□□□ 0.09
VPS28-210ENST00000529182 CCDC69A6NI79 296 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 KLRF2D3W0D1 207 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 DHX16O60231 1041 aaKnown RBP15.59■□□□□ 0.09
VPS28-210ENST00000529182 HMGCRP04035 888 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 ICAM1P05362 532 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 HOXC6P09630 235 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 KCTD2Q14681 263 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 SLC35G1Q2M3R5 365 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 MUM1L1Q5H9M0 696 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 ABRAQ8N0Z2 381 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 TRERF1Q96PN7 1200 aa15.59■□□□□ 0.09
VPS28-210ENST00000529182 POTEFA5A3E0 1075 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 DDAH1O94760 285 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 CCL5P13501 91 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 LIFRP42702 1097 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 UBXN2AP68543 259 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 CDC37Q16543 378 aaPredicted RBP15.58■□□□□ 0.08
VPS28-210ENST00000529182 BLOC1S2Q6QNY1 142 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 CCDC144CPQ8IYA2 1237 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 CHST13Q8NET6 341 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 UNC93B1Q9H1C4 597 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 JMJD4Q9H9V9 463 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 ZNF236Q9UL36 1845 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 WDR19Q8NEZ3 1342 aa15.58■□□□□ 0.08
VPS28-210ENST00000529182 HMGB1P09429 215 aaKnown RBP15.57■□□□□ 0.08
VPS28-210ENST00000529182 CASTP20810 708 aaKnown RBP15.57■□□□□ 0.08
VPS28-210ENST00000529182 CYP2C19P33261 490 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 ZNF792Q3KQV3 632 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 TKFCQ3LXA3 575 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 USH1GQ495M9 461 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 C8orf34Q49A92 452 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 Q6ZUG5 572 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 SGMS1Q86VZ5 419 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 ANKRD35Q8N283 1001 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 TMTC2Q8N394 836 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 ACAD9Q9H845 621 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 FBXO40Q9UH90 709 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 BRPF3Q9ULD4 1205 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 SLC12A7Q9Y666 1083 aa15.57■□□□□ 0.08
VPS28-210ENST00000529182 SMCHD1A6NHR9 2005 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 KIAA0100Q14667 2235 aaKnown RBP15.56■□□□□ 0.08
VPS28-210ENST00000529182 PRKAR2AP13861 404 aaKnown RBP15.56■□□□□ 0.08
VPS28-210ENST00000529182 RPS6KB1P23443 525 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 PSMA5P28066 241 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 CACNB2Q08289 660 aaPredicted RBP15.56■□□□□ 0.08
VPS28-210ENST00000529182 QRICH1Q2TAL8 776 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 MICU3Q86XE3 530 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 DDX11Q96FC9 970 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 MAML3Q96JK9 1138 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 TMEM106CQ9BVX2 250 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 RNF208Q9H0X6 261 aa15.56■□□□□ 0.08
VPS28-210ENST00000529182 A1CFQ9NQ94 594 aaKnown RBP15.56■□□□□ 0.08
VPS28-210ENST00000529182 DNAJC25-GNG10A0A024R161 153 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 NFIBO00712 420 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 CYTH3O43739 400 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 PLEKHA8P1O95397 391 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 FGD1P98174 961 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 MAP3K21Q5TCX8 1036 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 NSMFQ6X4W1 530 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.55■□□□□ 0.08
VPS28-210ENST00000529182 HOMER1Q86YM7 354 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 TRMT44Q8IYL2 757 aaKnown RBP15.55■□□□□ 0.08
VPS28-210ENST00000529182 CMTR1Q8N1G2 835 aaKnown RBP15.55■□□□□ 0.08
VPS28-210ENST00000529182 CTCFLQ8NI51 663 aaPredicted RBP15.55■□□□□ 0.08
VPS28-210ENST00000529182 CLEC4DQ8WXI8 215 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 PIBF1Q8WXW3 757 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 PIGSQ96S52 555 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 UPF3BQ9BZI7 483 aaKnown RBP15.55■□□□□ 0.08
VPS28-210ENST00000529182 RIOX1Q9H6W3 641 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 SLC5A4Q9NY91 659 aa15.55■□□□□ 0.08
VPS28-210ENST00000529182 MKI67P46013 3256 aaKnown RBP15.55■□□□□ 0.08
VPS28-210ENST00000529182 ZNFX1Q9P2E3 1918 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms