RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 TRIM22Q8IYM9 498 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 DNAJC5GQ8N7S2 189 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 SPRYD3Q8NCJ5 442 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 SNX21Q969T3 373 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 R3HDMLQ9H3Y0 253 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 RIOX1Q9H6W3 641 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 SLC38A10Q9HBR0 1119 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 TXNRD2Q9NNW7 524 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 HOMER2Q9NSB8 354 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 BTBD7Q9P203 1132 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 V9GY48 417 aaPredicted RBP18.25■□□□□ 0.51
HPS4-216ENST00000493455 PTPDC1A2A3K4 754 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 JAK2O60674 1132 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 HSP90AA1P07900 732 aaKnown RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 ANP32AP39687 249 aaKnown RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 MAP2K1Q02750 393 aaPredicted RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 TMEM132BQ14DG7 1078 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 SNRNP48Q6IEG0 339 aaKnown RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 GTF3C2Q8WUA4 911 aaPredicted RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 GPKOWQ92917 476 aaPredicted RBP eCLIP18.24■□□□□ 0.51
HPS4-216ENST00000493455 AGBL1Q96MI9 1066 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 RANBP17Q9H2T7 1088 aaKnown RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 CWC22Q9HCG8 908 aaKnown RBP18.24■□□□□ 0.51
HPS4-216ENST00000493455 RBPJLQ9UBG7 517 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 CCPG1Q9ULG6 757 aa18.24■□□□□ 0.51
HPS4-216ENST00000493455 ZBTB5O15062 677 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 TLR2O60603 784 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 CNMDO75829 334 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 CTDNEP1O95476 244 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 ALAS1P13196 640 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 IFNAR1P17181 557 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 GCLCP48506 637 aaPredicted RBP18.23■□□□□ 0.51
HPS4-216ENST00000493455 NTRK3Q16288 839 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 POTEEQ6S8J3 1075 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 LBX2Q6XYB7 198 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 HEATR3Q7Z4Q2 680 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 CCAR1Q8IX12 1150 aaKnown RBP18.23■□□□□ 0.51
HPS4-216ENST00000493455 MB21D1Q8N884 522 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 RABGAP1Q9Y3P9 1069 aa18.23■□□□□ 0.51
HPS4-216ENST00000493455 PNMA6FA0A0J9YX94 578 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 FMNL1O95466 1100 aaPredicted RBP18.22■□□□□ 0.51
HPS4-216ENST00000493455 ERVK-9P63128 1117 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 ERVK-24P63145 666 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 FUT2Q10981 343 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 BECN1Q14457 450 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 Q3C1V9 767 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 NCAPG2Q86XI2 1143 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 FBXO11Q86XK2 927 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 NSUN7Q8NE18 718 aaKnown RBP18.22■□□□□ 0.51
HPS4-216ENST00000493455 REPS2Q8NFH8 660 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 GPRC5AQ8NFJ5 357 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 COA7Q96BR5 231 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 ORC3Q9UBD5 711 aaPredicted RBP18.22■□□□□ 0.51
HPS4-216ENST00000493455 ADAMTS5Q9UNA0 930 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 ADGRA2Q96PE1 1338 aa18.22■□□□□ 0.51
HPS4-216ENST00000493455 ZSWIM8A7E2V4 1837 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 PRPF3O43395 683 aaKnown RBP18.21■□□□□ 0.51
HPS4-216ENST00000493455 FDX1P10109 184 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 SMARCA1P28370 1054 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 STAT3P40763 770 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 AMNQ9BXJ7 453 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 RNF26Q9BY78 433 aaPredicted RBP18.21■□□□□ 0.51
HPS4-216ENST00000493455 SPATC1LQ9H0A9 340 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 ZNF214Q9UL59 606 aaPredicted RBP18.21■□□□□ 0.51
HPS4-216ENST00000493455 ZNF536O15090 1300 aa18.21■□□□□ 0.51
HPS4-216ENST00000493455 PPP1R11O60927 126 aaPredicted RBP18.2■□□□□ 0.5
HPS4-216ENST00000493455 ICAM1P05362 532 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 FAM110CQ1W6H9 321 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 MTMR8Q96EF0 704 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 AIFM3Q96NN9 605 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 MOV10L1Q9BXT6 1211 aaKnown RBP18.2■□□□□ 0.5
HPS4-216ENST00000493455 TEX13BQ9BXU2 312 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 SMC3Q9UQE7 1217 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 RBM19Q9Y4C8 960 aaKnown RBP18.2■□□□□ 0.5
HPS4-216ENST00000493455 PCDHA1Q9Y5I3 950 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 MGAMO43451 1857 aa18.2■□□□□ 0.5
HPS4-216ENST00000493455 RBBP6Q7Z6E9 1792 aaKnown RBP18.19■□□□□ 0.5
HPS4-216ENST00000493455 PLXNB2O15031 1838 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 DEXIO95424 95 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 BCRP11274 1271 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 SCG2P13521 617 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 CCNA1P78396 465 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 WWC2Q6AWC2 1192 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 C17orf99Q6UX52 265 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 FAM184AQ8NB25 1140 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 EFCC1Q9HA90 598 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 RNF146Q9NTX7 359 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 RIPK3Q9Y572 518 aa18.19■□□□□ 0.5
HPS4-216ENST00000493455 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.19■□□□□ 0.5
HPS4-216ENST00000493455 ERCC3P19447 782 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 OAZ1P54368 228 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 NAPAP54920 295 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 PFKFB3Q16875 520 aaPredicted RBP18.18■□□□□ 0.5
HPS4-216ENST00000493455 TRERF1Q96PN7 1200 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 LLPHQ9BRT6 129 aaKnown RBP18.18■□□□□ 0.5
HPS4-216ENST00000493455 PORCNQ9H237 461 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 WBP1LQ9NX94 342 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 SAGE1Q9NXZ1 904 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 VPS54Q9P1Q0 977 aa18.18■□□□□ 0.5
HPS4-216ENST00000493455 RBM27Q9P2N5 1060 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms