RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 HMGCRP04035 888 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 FCER1AP12319 257 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 CPA1P15085 419 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 ZKSCAN1P17029 563 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-213ENST00000481019 CYP2C19P33261 490 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 RGS19P49795 217 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 CACNB2Q08289 660 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-213ENST00000481019 MAP3K21Q5TCX8 1036 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 TRPV1Q8NER1 839 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 MYL10Q9BUA6 226 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 MAD2L2Q9UI95 211 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 SNX14Q9Y5W7 946 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 IVNS1ABPQ9Y6Y0 642 aa14.31□□□□□ -0.12
PTPRF-213ENST00000481019 PLXNA1Q9UIW2 1896 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 PRKAR2AP13861 404 aaKnown RBP14.3□□□□□ -0.12
PTPRF-213ENST00000481019 CCND3P30281 292 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-213ENST00000481019 HSPA4P34932 840 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 OAZ1P54368 228 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 UBXN2AP68543 259 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 TROAPQ12815 778 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 WTAPQ15007 396 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 ZNF792Q3KQV3 632 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 TSGA10IPQ3SY00 556 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 DPP9Q86TI2 863 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 RAB11FIP4Q86YS3 637 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 ADGRF4Q8IZF3 695 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 ABRAQ8N0Z2 381 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 FGD4Q96M96 766 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 RNF208Q9H0X6 261 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 CTDP1Q9Y5B0 961 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-213ENST00000481019 DDX49Q9Y6V7 483 aaKnown RBP14.3□□□□□ -0.12
PTPRF-213ENST00000481019 LCTP09848 1927 aa14.3□□□□□ -0.12
PTPRF-213ENST00000481019 DNAJC25-GNG10A0A024R161 153 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 PALM3A6NDB9 673 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-213ENST00000481019 PARP1P09874 1014 aaKnown RBP14.29□□□□□ -0.12
PTPRF-213ENST00000481019 ALAS1P13196 640 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 MCM5P33992 734 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 EXOSC10Q01780 885 aaKnown RBP14.29□□□□□ -0.12
PTPRF-213ENST00000481019 GRM4Q14833 912 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 C8orf34Q49A92 452 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 MAML3Q96JK9 1138 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 TRERF1Q96PN7 1200 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 NEK1Q96PY6 1258 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 PURBQ96QR8 312 aaKnown RBP14.29□□□□□ -0.12
PTPRF-213ENST00000481019 USP26Q9BXU7 913 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.29□□□□□ -0.129e-6■■□□□ 13.2
PTPRF-213ENST00000481019 JMJD4Q9H9V9 463 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 PAK6Q9NQU5 681 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-213ENST00000481019 RNF146Q9NTX7 359 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 CCPG1Q9ULG6 757 aa14.29□□□□□ -0.12
PTPRF-213ENST00000481019 ASTN1O14525 1302 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 ICAM1P05362 532 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 FDX1P10109 184 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 RXRAP19793 462 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 CNTN2Q02246 1040 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 KCTD2Q14681 263 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 ASPRV1Q53RT3 343 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 PRAMEF19Q5SWL8 479 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 GPATCH4Q5T3I0 446 aaKnown RBP14.28□□□□□ -0.12
PTPRF-213ENST00000481019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.28□□□□□ -0.12
PTPRF-213ENST00000481019 CLEC4DQ8WXI8 215 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 DEFB118Q96PH6 123 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 TMEM106CQ9BVX2 250 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 VAT1LQ9HCJ6 419 aa14.28□□□□□ -0.12
PTPRF-213ENST00000481019 A1CFQ9NQ94 594 aaKnown RBP14.28□□□□□ -0.12
PTPRF-213ENST00000481019 ERICH2A1L162 156 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 KLRF2D3W0D1 207 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 NFIBO00712 420 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 CYTH3O43739 400 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 PPP1R11O60927 126 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-213ENST00000481019 REC8O95072 547 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 SEC24BO95487 1268 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 GJB1P08034 283 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 COPB2P35606 906 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 CDC37Q16543 378 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-213ENST00000481019 RNF20Q5VTR2 975 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 OLFML2BQ68BL8 750 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 TRMT44Q8IYL2 757 aaKnown RBP14.27□□□□□ -0.13
PTPRF-213ENST00000481019 ZNF654Q8IZM8 581 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 CHST13Q8NET6 341 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 U2AF1L4Q8WU68 220 aaKnown RBP14.27□□□□□ -0.13
PTPRF-213ENST00000481019 BRPF3Q9ULD4 1205 aa14.27□□□□□ -0.13
PTPRF-213ENST00000481019 BAZ2BQ9UIF8 2168 aaKnown RBP14.27□□□□□ -0.13
PTPRF-213ENST00000481019 RPTORQ8N122 1335 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 SOWAHBA6NEL2 793 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 EPB41L2O43491 1005 aaKnown RBP14.26□□□□□ -0.13
PTPRF-213ENST00000481019 CYBAP13498 195 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 GJA8P48165 433 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 SART3Q15020 963 aaKnown RBP14.26□□□□□ -0.13
PTPRF-213ENST00000481019 QRICH1Q2TAL8 776 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 ANKRD35Q8N283 1001 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 NUP133Q8WUM0 1156 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 TBC1D5Q92609 795 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 MTMR8Q96EF0 704 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 TMEM87BQ96K49 555 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 JAKMIP1Q96N16 626 aaKnown RBP14.26□□□□□ -0.13
PTPRF-213ENST00000481019 CRISPLD2Q9H0B8 497 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 ACAD9Q9H845 621 aa14.26□□□□□ -0.13
PTPRF-213ENST00000481019 PLEKHA8P1O95397 391 aa14.25□□□□□ -0.13
PTPRF-213ENST00000481019 SGPL1O95470 568 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms