RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TAF6LQ9Y6J9 622 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 OTOL1A6NHN0 477 aaPredicted RBP6.44□□□□□ -1.38
VPS29-202ENST00000447578 WTIPA6NIX2 430 aaPredicted RBP6.44□□□□□ -1.38
VPS29-202ENST00000447578 NUDT19A8MXV4 375 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 IRS4O14654 1257 aaPredicted RBP6.44□□□□□ -1.38
VPS29-202ENST00000447578 MPOP05164 745 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 RAB3GAP1Q15042 981 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 CRTC3Q6UUV7 619 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 TMC6Q7Z403 805 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 SLCO6A1Q86UG4 719 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 REXO1Q8N1G1 1221 aaKnown RBP6.44□□□□□ -1.38
VPS29-202ENST00000447578 TMEM52Q8NDY8 209 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 FEZF2Q8TBJ5 459 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 SLC9A7Q96T83 725 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 PCDHB12Q9Y5F1 795 aa6.44□□□□□ -1.38
VPS29-202ENST00000447578 ZNF205O95201 554 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 VAV1P15498 845 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 BMP8BP34820 402 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 CCNFP41002 786 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 NCKAP1LP55160 1127 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 AUHQ13825 339 aaKnown RBP6.43□□□□□ -1.38
VPS29-202ENST00000447578 NFIXQ14938 502 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 HS2ST1Q7LGA3 356 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 LDHDQ86WU2 507 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 IGDCC3Q8IVU1 814 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 ZDHHC14Q8IZN3 488 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 NUP43Q8NFH3 380 aa6.43□□□□□ -1.38
VPS29-202ENST00000447578 C9IYK1 514 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 TNFRSF10CO14798 259 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 ITGAEP38570 1179 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 ZNF165P49910 485 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 CYP4F8P98187 520 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 CNKSR3Q6P9H4 555 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 FAM129CQ86XR2 697 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 SYT8Q8NBV8 401 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 NKD1Q969G9 470 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 EAF1Q96JC9 268 aaPredicted RBP6.42□□□□□ -1.38
VPS29-202ENST00000447578 JMJD8Q96S16 334 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 BCL11AQ9H165 835 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 IMPACTQ9P2X3 320 aa6.42□□□□□ -1.38
VPS29-202ENST00000447578 MEIS3P2A8K0S8 358 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 ABLIM1O14639 778 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 SASH1O94885 1247 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 ACRP10323 421 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 TCF3P15923 654 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 ARL4AP40617 200 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 LAPTM5Q13571 262 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 MRPL58Q14197 206 aaKnown RBP6.41□□□□□ -1.38
VPS29-202ENST00000447578 RTP2Q5QGT7 225 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 SLITRK4Q8IW52 837 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 RTEL1Q9NZ71 1219 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 ACSL6Q9UKU0 697 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 PCDHA5Q9Y5H7 936 aa6.41□□□□□ -1.38
VPS29-202ENST00000447578 A0A1W2PQ45 241 aaPredicted RBP6.4□□□□□ -1.38
VPS29-202ENST00000447578 A0A1W2PQY0 241 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 SHOXO15266 292 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 MSL3P1P0C860 447 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 KRTAP10-2P60368 255 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 LRRFIP1Q32MZ4 808 aaKnown RBP6.4□□□□□ -1.38
VPS29-202ENST00000447578 TDRD10Q5VZ19 366 aaKnown RBP6.4□□□□□ -1.38
VPS29-202ENST00000447578 OLFML2BQ68BL8 750 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 RPTNQ6XPR3 784 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 PWWP2AQ96N64 755 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 NT5C1AQ9BXI3 368 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 TNFRSF12AQ9NP84 129 aa6.4□□□□□ -1.38
VPS29-202ENST00000447578 BUB1BO60566 1050 aaPredicted RBP6.39□□□□□ -1.39
VPS29-202ENST00000447578 GSTM1P09488 218 aa6.39□□□□□ -1.39
VPS29-202ENST00000447578 MVKQ03426 396 aa6.39□□□□□ -1.39
VPS29-202ENST00000447578 CCDC144CPQ8IYA2 1237 aa6.39□□□□□ -1.39
VPS29-202ENST00000447578 C7orf61Q8IZ16 206 aa6.39□□□□□ -1.39
VPS29-202ENST00000447578 DSCC1Q9BVC3 393 aa6.39□□□□□ -1.39
VPS29-202ENST00000447578 SUCOQ9UBS9 1254 aaKnown RBP6.39□□□□□ -1.39
VPS29-202ENST00000447578 VAMP1P23763 118 aa6.38□□□□□ -1.39
VPS29-202ENST00000447578 CBX2Q14781 532 aaPredicted RBP6.38□□□□□ -1.39
VPS29-202ENST00000447578 SKOR2Q2VWA4 1001 aaPredicted RBP6.38□□□□□ -1.39
VPS29-202ENST00000447578 PRRT2Q7Z6L0 340 aaPredicted RBP6.38□□□□□ -1.39
VPS29-202ENST00000447578 TP53I13Q8NBR0 393 aaPredicted RBP6.38□□□□□ -1.39
VPS29-202ENST00000447578 SPON2Q9BUD6 331 aa6.38□□□□□ -1.39
VPS29-202ENST00000447578 SLC12A9Q9BXP2 914 aa6.38□□□□□ -1.39
VPS29-202ENST00000447578 FAM86C1Q9NVL1 165 aa6.38□□□□□ -1.39
VPS29-202ENST00000447578 HCFC2Q9Y5Z7 792 aa6.38□□□□□ -1.39
VPS29-202ENST00000447578 H0Y8X5 98 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 GSNP06396 782 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 ENDOUP21128 410 aaKnown RBP6.37□□□□□ -1.39
VPS29-202ENST00000447578 PLEKHN1Q494U1 663 aaPredicted RBP6.37□□□□□ -1.39
VPS29-202ENST00000447578 LDLRAD1Q5T700 205 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 DCAF15Q66K64 600 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 PPFIBP1Q86W92 1011 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 KIAA0825Q8IV33 1275 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 NAT16Q8N8M0 369 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 CXorf38Q8TB03 319 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 BRF1Q92994 677 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 ADAM7Q9H2U9 754 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 PLA2G2DQ9UNK4 145 aa6.37□□□□□ -1.39
VPS29-202ENST00000447578 A0A1W2PQ27 194 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 A0A1W2PQ64 194 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 A0A1W2PQC6 194 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 A0A1W2PQD8 194 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 SUV39H1O43463 412 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 LIMS1P48059 325 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms